Detail information of BGIOSGA032052_circ_g.3


General Information
CircRNA Name BGIOSGA032052_circ_g.3
ID in PlantcircBase osi_circ_008891
Alias Chr10:13247813_13250188(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9966025-9968401  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032052
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032052-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGCTTTCTCCCGGTTGGCAACAATAGCACTGCCACCTCCATTCTCAGCGGCAAGGTACATATT
GTTGGTGACCGATTTGAATTGGAGCTGGGTGCCATCctctgcccatttgaatgcgttatccaag
gcttgtagagatccaccaacaaaaggtgcaggagggttggggtcgctggcgatccaccatccaa
ctgggatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCCCATTTGAATGCGTTATCCAAGGCTTGTAGAGATCCACCAACAAAAGGTGCAGGAGGG
TTGGGGTCGCTGGCGATCCACCATCCAACTGGGATCCTCACTGCATTTAGCCCATTTGATGAGA
TGAATTTGAAGTCATCCTCAACTATAAATGTGTTCCAGTGCTCCTGCAAACAAAGAACTTTAGA
TATTGAACTGCAATTATTACTATATTTTCGCCTCAAGAAGAAGAGTATTTTTATACACTACAAT
AGTAATTTATTTCAAAAAAGGATATGCATATTGCTCTGTTTTTTGGCTTGCCCATTTGACAACT
AGAATTAGTAATGAATACCATAAATAAACTATGTAAGTGCTAGCTTCTCTTTCTTCAAAAGATT
TCTTCATAAGAAAGACAATAACTCTATTCAGTGAGGTTCTACCATTTCTTTAACTAGTACAAAA
TTGGAAGGAACTCAGCATATATTAATTGTTGAAGATTACTATTGAACAAAAACAAAAGGAATTG
TCGAACCAATAATAACAGTGATACAAATATAACACTTTGGTTTTTAAGGATAGAAAAAACAAGT
GATCTAAACATCGTATGCCTACAGCTATCCATTCAGTGTCTCAACAAAAATAGAATAGAAACAA
CAGTGTCACATCTTACCCTGAGCACCTCTGTGGCATTGCCTGCACTGTAGCCATTGCAAATCTG
GTATTCCCCTTGCAAGCCATAAATATTATTTACTACAAAGACTGATGGGTCATCATTTCCCCAA
TTTGTGCTAGCACCATGATCTGCAGTGACTGAACCCATGGCCTTCACCTAACATCTCAAAAGGA
GAAATATATTTACAATTGACGATGCAGTTAATCTAATAGAAGTACGTGCGACTGAAAGAAACCT
TAAAAAAGTGATTTGCATAACTACTACACAACTTGCCCGCTTTATCAAACCAAATGCAGTTCTC
GAATAGCCACACTGTGTTGCCAGACACACACAATAAAAAACACTAACAAATTAAGTTAGGTTAA
ACCAGATAACCATGATAAAAAAAGTTTTTTTAAGATTGACTAACCTGAAGATTTCACATATCTA
ACCTGAAGACTGTTTTATCTGAATTTTAGACATCTCCCTTAAAAAAAAGATGAATTTAAGACAT
GGTGTTACATATGGAAATTAAAGGTGGCTACGACATATTTGCAAAAGAAAAATAATTTGTGAAT
AAAACTTTTATATACGCGTTCTTAGCGATCTAAAAGCAAAGGCTGAAAAATAAACTTTGATAAA
AAAAACCCAAAATCAATTCCAAATTTAAGGTTGAAAATTTAAATTTTGGCTAAAAAGCATAAAC
ATAAGTGAAAAGATGAGGCTAATAGTATTTCCATAAAAACAGGTGGCTGCAGAATTTCCATAGA
AATACTCCCTCCGTCCCATTTTAAGTGCAACCATGTGTTTATGTGTCTAACTTTGATCGTCCGT
CTTATTTATAGTTTTTTATGATTAATATTTTTATTGTTATTAGATGATAAAACATGAATAGTAC
TTTATGTGTGACTTATGTTTTTAATTTTTTTCAAAAAATTTCAAATAAGACGGATGATCAAAGT
TGGGCACGGCAAATCATGGCTGCACTCAAAATGGGACAGAGGGAGTATGTCGCTATAGAACTTC
CCAAACTAAGTACATTTTCACCCTTGCACCGTTTGCGTCCTAAAATCTTGTATGCGTGTAGGCT
CTGTCACTAGATTTAAGGCATGTATTACTTAGGTGGTGGCTCTAGTCCTTGAACATAATAATAA
TTTCCACCGCTGCGCAAACTAGTTAATAGTATAGAAATCTAGCACCTGAGATCTACCAAAGGTG
CGTGAGCATAATACAACCACTACACTAACAACTTGAATTAAAAAAAAATCACTCCTTGAAACTA
GAAGATTGTTAAATCAATAGACATTCATCAGTAAATTGAAATAATCACATATGTTCCGTAGATA
TTGAGAGAATGCATACATGATAGTAGCAGGTAACAACTAGATGCACACTGACAAGGCATTTTTC
GTTTTGCAAATTAACCTTACCTGCAAGAATTTCCCATTGGATGCCCTTATGCGCATCCTGCTTT
TGTCGCTGTCAAGGCGAATGATCTGAAATGTTTCATTCGGCCCCGGCACGGTTGCTGTTGCAAT
AACTGCCCCATTGCCGCCAATGCTCACAAACTGGTTGTTGAAAACCCTGAGATTGAATGTAGTC
TCGTTGATCCTCCACAGTTTGAAGGTCTCCCAACCAGACGCTTTCTCCCGGTTGGCAACAATAG
CACTGCCACCTCCATTCTCAGCGGCAAGGTACATATTGTTGGTGACCGATTTGAATTGGAGCTG
GGTGCCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021