Detail information of BGIOSGA031662_circ_ig.1


General Information
CircRNA Name BGIOSGA031662_circ_ig.1
ID in PlantcircBase osi_circ_008535
Alias Chr10:20170733_20171806(MH63RS2), Chr10:20170733_20171806(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17206570-17207643  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CA-CT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGCCCTTATGTTCTGTAGTGCATGCTTATCCATTTCTATGTTTTCTTTTTCTTCTTTCCAT
CTGCACAAAAGAATGCCATCAACTGATCCTTTAAAGggttagtatcgcaaagtttttacttatg
tttcttttgtatcgctatattatatgcatgcaattatgaaatacctattatgtacctgttgcca
ttcgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTAGTATCGCAAAGTTTTTACTTATGTTTCTTTTGTATCGCTATATTATATGCATGCAATTA
TGAAATACCTATTATGTACCTGTTGCCATTCGAGTTAATAATTCTGGACCAGGTATTAGAGAGA
AAACAGACCAGTAAATCAGAATAGGTACAATGGATTCAAGTTAATTTAGCTCAACTGCTCAAGC
ATTAGCCTGAGAGGTTCCTATTCATTTAAAATTATTATATGTAACCATTTCGAGTCATTTCTAG
CATTCTAGCAATGGCTTGCTGTATGTACACTAAATCTACTAGCAAAATGCCCAAGCTTTGCTAC
AGGACAGAAGAAAAAAAATCATAATATGTCATAGCTAAATATTTTTTTATTCAAATATCTTAGT
ATCACTTGTTTGAACCAAATGTTGGACTATTCCACTATATTAGAAAATATCAGGGGGCAATTTG
TAAAAACTGCAAAAACAATGGCAGATTCACTGCCACCATCACTAGAGGCTTTTAAAAAGAGTAT
AGATGTTTCCCTGTTATTGCAGCATAAGAATAACAATTTGATTCCTCTCGTGTTTTAAGCAAGC
AAGCATGATAATTAAATTATATTTCAAGCAAAATTTGACCATTTTAGTTACTTATCCTGACGGT
GGCATTAAGGCTCATACTATACATATAATAATAATTTTAAATGAATGGTTTAGAGGTTGTGCAA
GTCCACACTGTATTTTCTACTTTGATGTCTTGTGGCCTATGTTGTTTGTCTGGTGAATGCCACA
GTTAGAACTTGTTTGAGACCGAGCATGGCACCTATGCTCGATCAGGAGAATCTATCCTCAGGCT
CCTCAAGACCTGAACCACTTCTGTTTTTAGAATGCGTGGTGTGATGAGGAAGGAATAATAATAA
ACATAAAATATAAGTGTGCTGTTATGAAGGTTCAGCTGTATGCATGTAGTATTTAAGTGTTCTG
TAAGTGTTCTATTTTTTTGCCCTTATGTTCTGTAGTGCATGCTTATCCATTTCTATGTTTTCTT
TTTCTTCTTTCCATCTGCACAAAAGAATGCCATCAACTGATCCTTTAAAG
Conservation Information
Conserved circRNAs osa_circ_007194
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021