Detail information of AT2G05520_circ_g.2


General Information
CircRNA Name AT2G05520_circ_g.2
ID in PlantcircBase ath_circ_012882
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2026611-2026646  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G05520
Parent gene annotation Glycine-rich protein 3
Parent gene strand +
Alternative splicing 2_circ_ag.3 AT2G05380_circ_g.4 AT2G05440_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G05440_circ_g.4 AT2G05440_circ_g.5 AT2G05440_circ_g.6 AT2G05440_circ_g.7 AT2G05440_circ_g.8 AT2G05440_circ_g.9 AT2G05440_circ_g.10 AT2G05440_circ_g.11 AT2G05440_circ_g.12 AT2G05440_circ_g.13 AT2G05440_circ_g.14 AT2G05440_circ_g.15 AT2G05440_circ_g.16 AT2G05440_circ_g.17 AT2G05440_circ_g.18 AT2G05440_circ_g.19 AT2G05510_circ_g.1 AT2G05510_circ_g.2 AT2G05510_circ_g.3 AT2G05510_circ_g.4 AT2G05510_circ_g.5 AT2G05510_circ_g.6 AT2G05510_circ_g.7 AT2G05510_circ_g.8 AT2G05510_circ_g.9 AT2G05510_circ_g.10 AT2G05510_circ_g.11 AT2G05520_circ_g.1 AT2G05520_circ_g.3 AT2G05520_circ_g.4 AT2G05520_circ_g.5
Support reads 1
Tissues aerial
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered AT2G05520.2:1
AT2G05520.4:1
AT2G05520.1:1
AT2G05520.6:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAATTACCAAGGAGGAGgttaccagggaggagggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACCAGGGAGGAGGGGGTAATTACCAAGGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017