Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009312_circ_g.3 |
ID in PlantcircBase | zma_circ_009595 |
Alias | zma_circ_0002971 |
Organism | Zea mays |
Position | chr8: 54224014-54224296 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d009312 |
Parent gene annotation |
Putative chromatin-remodeling factor family |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009312_T021:1 Zm00001d009312_T011:1 Zm00001d009312_T006:1 Zm00001d009312_T007:1 Zm00001d009312_T004:1 Zm00001d009312_T002:1 Zm00001d009312_T015:1 Zm00001d009312_T010:1 Zm00001d009312_T003:1 Zm00001d009312_T009:1 Zm00001d009312_T026:1 Zm00001d009312_T013:1 Zm00001d009312_T031:1 Zm00001d009312_T037:1 Zm00001d009312_T035:1 Zm00001d009312_T025:1 Zm00001d009312_T028:1 Zm00001d009312_T017:1 Zm00001d009312_T008:1 Zm00001d009312_T012:1 Zm00001d009312_T014:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.527775771 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
54224102-54224033(+) 54224292-54224033(+) 54224089-54224283(-) |
Potential amino acid sequence |
MSQMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVEN AGSSPISS*(+) MQVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVINAGGERKRLLNIA MQLRKCCNHPYLFQGAEPGPPYTTGEHLVENAGSSPISS*(+) MVSFFGGRPFSTSDLSLLRRNGRRTCILN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |