Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA030958_circ_g.2 |
ID in PlantcircBase | osi_circ_008112 |
Alias | 9:16857094|16860603 |
Organism | Oryza sativa ssp. indica |
Position | chr9: 16857094-16860603 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA030958 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA030958_circ_g.1 BGIOSGA030958_circ_g.3 BGIOSGA030958_circ_g.4 BGIOSGA030958_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA030958-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_039559* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16858071-16860556(-) 16860496-16858087(+) 16858069-16858087(+) |
Potential amino acid sequence |
MNPPPPIRPFLSCCCLAAVAATCPTPAKGSVHWWWWWWWWCPSAATGCAAAAAAGWPQRTNGVG SALTTAAATGRAPATWLMLNVPMPPGNACCCCCCCSWLVGGGAGAGVGFSSGCRKSCVLRKKPV IDLAAPTLLGSRVL*(-) MGRVGAAVEVVLISGPAHHVQSTLLPSSVGAARSMTGFFLRTHDFLQPLEKPTPAPAPPPTSQL QQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHH HHQWTLPFAGVGQVAATAARQQQERKGRIGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLK ELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFLPEDARLPAAAGEADAGAGA ASDEPAAAAAAAASVPRRHRNVQHQPRRRRTPGRGCRRQGRADAVRSLGPARRRRRRAPGRRTR APPPPPPPPVDAPLRRRRAGGRHRGEAAAGEEGANRGRRVHGLWLQI*(+) MDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQ RRRSKINDRFLPEDARLPAAAGEADAGAGAASDEPAAAAAAAASVPRRHRNVQHQPRRRRTPGR GCRRQGRADAVRSLGPARRRRRRAPGRRTRAPPPPPPPPVDAPLRRRRAGGRHRGEAAAGEEGA NRGRRVHGLWLQI*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |