Detail information of BGIOSGA030958_circ_g.2


General Information
CircRNA Name BGIOSGA030958_circ_g.2
ID in PlantcircBase osi_circ_008112
Alias 9:16857094|16860603
Organism Oryza sativa ssp. indica
Position chr9: 16857094-16860603  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA030958
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA030958_circ_g.1 BGIOSGA030958_circ_g.3 BGIOSGA030958_circ_g.4 BGIOSGA030958_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA030958-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGGAGCTGCAGTGGAAGTGGTACTGATCAGCGGCCCAGCTCACCACGTTCAAAGCACTCTGC
TACCGAGCAGCGTCGGCGCAGCAAGATCAATGACAGgtttcttcctgaggacgcacgacttcct
gcagccgctggagaagccgacgccggcgccggcgccgcctccgacgagccagctgcagcagcag
cagcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTTCCTGAGGACGCACGACTTCCTGCAGCCGCTGGAGAAGCCGACGCCGGCGCCGGCGCC
GCCTCCGACGAGCCAGCTGCAGCAGCAGCAGCAGCAGCAAGCGTTCCCCGGCGGCATCGGAACG
TTCAGCATCAGCCACGTCGCCGGCGCACGCCCGGTCGCGGCTGCCGTCGTCAAGGCCGAGCCGA
CGCCGTTCGTTCTCTGGGGCCAGCCCGCCGCCGCCGCCGCCGCGCACCCGGTCGCCGCACTAGG
TACGCACATACATACACTCGTCTACAGCGAATACCTGCGGCGCCGCGCGCGCGCGCGCGCACGC
CGCCGCGGTAGCTAGTGGACGCCGCTCTCGCGTTCGCGTTTGCCTTTTCCGGTCGCCGACGTTG
ACGCTCGCGGGGGCACACGCGCACGCGGCCACGCGTGCGCGGTGCGCGAGCGCATCGCCTTTTC
TCCTCTCCTTACCGCGGTCGCTTTCGCGGCATCACACTCGCGCGCGCGTGCGCGTGAGACCGAG
GGAGAAAGGTGGAGGAGGGCCGAGGGGGAGGGGACAAGCTGGGCCTCGATCGGTGGGCCGGGCG
ATCAGAAGTTTGGGCCGGAAAATGGGGCCCATGTTGTCCGTGCAAAACTGAGCCTTCGTCTAGT
CGTCACGCGTCCCACCACGTGAACGCCAGGTGCTTAGCCGCCGAACGCGGCCCACCACCGGTGG
CCGCCACCGCGGCTACGGCCACACGCGCGTCTCCACGTAGAGCACCACTATCCCACTGACATGT
GGGCCAGTGGGCATTTTCTCTGCTGCCTTAGACAAAAGCTAGAGGCGAGCACTTTGTCATTGTG
TGTACTCCTCCACTGTGCAGGGCACCACCACCACCACCACCACCACCAGTGGACGCTCCCCTTC
GCCGGCGTCGGGCAGGTGGCCGCCACCGCGGCGAGGCAGCAGCAGGAGAGGAAGGGGCGAATCG
GGGGAGGCGGGTTCATGGACTCTGGCTCCAGATCTAGTGGCGGCGCCGGGTTCGACGACGACGA
TGGCGTGGCCGCGCGGCGTGAGGTCTCGTCCTCGCTCAAAGGTACCCCAATTCCGTTCAATTCC
GCTCGGTTTCGCGAGAAATTTTGTTGTTCTGGGTTGCTGGCCGCGTCGATGGTGGAGAATCCGC
GGGTTTTGCGGGGTTTTGGCATCGTTTTCCCCCAATTTTTTGGCCTGTGTTTTATGCGAGAAGC
GGAGAAATGCCCCGTTGTTGGTGCTCACGAGGTAGTGTTTGTGTAGCAGAGAGGAGGAGGGAGG
GTAGGGGGGAAGAAGGGAGGAGGAGGTCGCGTGAGCTCATGGAGATGGAGATGGAGATGTACTC
GCGGTGCGCGCGGCCATCCCACATCCACCAGCTGCATGCGCGCCTCGTGGTCTCCGGCCGCCTC
CGCTGCACCTCGCCGTCGCTCGCGCTCGCGCTGCTCCGCGCCGCGTGCCGCGTGCGCGCGTCGC
CGTGCCTGCGTCCCCTCGCCCACCACCTGCTCGACCATATCCCGCGCCCGCACCCGCATCTGCT
CCACGCGGCCGCTCGCCTCGCGTACCGTCTGCGCCTGCCTTCCCTCGCGCTCCGCCACTATGTC
GCCCTCCGCACGCACCACCCGGTGTTCCTCCCTCCCGCAGCGGCCATCGCGGACATGCTCAAGT
CTGTCCGTGGCCGCGCCGCGCATGCCCACGCGCTACGCGTCACCGCCCACGCAGGGGACACTAG
GTTCCTGGATAACACACTTATCGCGATGTACTTTGCCTGTGGAGATGTCCAGCGCGCACGGCTT
GTGTTTGAGGGAATGTGTGACCGGGATGTCATCTCATGGACATCGCTAATCTCAGGACTAGTGC
AAAATGGCAGCCCCTTGCAAGGTATACAGCAGTTTGCAACGATGATGCACTGTGATGTACGCCC
TGACTTTGTGGTGCTAGTGACCATCGCCAAGGCGTTCATGGAGCTTGATAACCTGCCAGGTGCT
GAATCAGCTCATTCCTTAGTTGTCAAGGGCGGTTTCCATGATGAACAAGATGTGATGATCACAT
TGACAGCCATGTATGCCAGCTTTGGGTGCTTAGTAGCTGCGAGGGCGCTTTTTGACATGGTCCC
ACCCCAGCAGGTGAATGTGATCCTGTGGAATGCCATGATATCAGGTTACTCCAAGAATGGATTT
GCCAGTGAGGCAGTGCATTTATACAAGCATATGCAGCTGGTTGCTAGGAACTTGGCTCCCGATT
CTATCACTTTGCGATCAGTAATATTTGCATGTGCTCAGCTTGGCTCCACTGAGCTTGCGGCATG
GATGGAGGATTGTGTATGCTGCAGTGAGTACAGGGAGGATGTGCTTGTGAACACAGCTTTGATT
GACATGTATGCCAAATCAGGGAGCATCTCTCATGCACGTGCAGTCTTTGAACGGATGCATGTGG
ATGACCGTGATGTGGTAGTCTGGAGTGCTTTAATCACGGGTTATGGTGTGCAAGGCCTTGTCAA
TGAGGCTTGCACTTTGTTTCAGGACATGAAGCTTGCTGGAGTAAGACCAAATGACGTGACATTC
CTTGGACTTCTATCAGCATGCAACCATGCAGGTGCTGTTGAGAAAGGATGGAGCTACTTTCACT
CTATGAAACCTGACTATGGAATTGAGCCCCAGCACCAGCACTATGCTTGCGTGGTAGACCTGCT
TTCTCGTGCTGGACAGCTTGATAGAGCCTACCAATTTATACTGAATATGCCCATCAAACCAGAG
ATGACTGTCTGGGGCGCTTTACTCCATGGTTGCAAGATGCACGGGCACTCAAACATGGCCATGG
CTGAATGCGCAGCACAGCACATTTTTGAGTTGGAGCAGTCCAATGCAGGGCACTATGTTCAGCT
TGCAAACATGTATGCATCTGCAGGGATGTGGAGCCAAGTCGCTGGCATGCGAGTCACCATGAGA
GAGAGGGGTGTCACCAAGGCAACGGGGTTTAGCTTCATCGAGGTTGATGGAGAGGTGCACTCAT
TCCATGCTTGGGATCACTCGCACCCGAGGGCCACCGAGATATTCGCCATGCTGTGCCTTCTTTC
TCCAACTCCAACCGGAGTTGGAGGGTGAAAGTTGTTGAGTGCCTTTAACTAGCCATGCATTGTT
TGTATCCTGCAATTGTTTATGACCTGAGCAGTCTTCAGTCAGCATTCATTCTGTTATTTGTATC
TTGTTATGATAATGCAACCACAATATATTTCACAACAGAACACCTGAACCAACGAAAAGAAAAC
GAAAAAAATATTTTTTACATACCAGTACAGCTTATTTATTTACATATATGGAGTAAAATATTCT
ATGGAACATTCCCCTCACCTTATTTGGTACTAATGAATTTTTATTTATGTAGCAGAGTTGACAG
TGAGGGTGGATGGGAAGGGTGGGAGCTGCAGTGGAAGTGGTACTGATCAGCGGCCCAGCTCACC
ACGTTCAAAGCACTCTGCTACCGAGCAGCGTCGGCGCAGCAAGATCAATGACAG
Conservation Information
Conserved circRNAs osa_circ_039559*
PMCS
Functional Information
Coding potential Y
Potential coding position 16858071-16860556(-)
16860496-16858087(+)
16858069-16858087(+)
Potential amino acid sequence MNPPPPIRPFLSCCCLAAVAATCPTPAKGSVHWWWWWWWWCPSAATGCAAAAAAGWPQRTNGVG
SALTTAAATGRAPATWLMLNVPMPPGNACCCCCCCSWLVGGGAGAGVGFSSGCRKSCVLRKKPV
IDLAAPTLLGSRVL*(-)
MGRVGAAVEVVLISGPAHHVQSTLLPSSVGAARSMTGFFLRTHDFLQPLEKPTPAPAPPPTSQL
QQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHH
HHQWTLPFAGVGQVAATAARQQQERKGRIGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLK
ELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFLPEDARLPAAAGEADAGAGA
ASDEPAAAAAAAASVPRRHRNVQHQPRRRRTPGRGCRRQGRADAVRSLGPARRRRRRAPGRRTR
APPPPPPPPVDAPLRRRRAGGRHRGEAAAGEEGANRGRRVHGLWLQI*(+)
MDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQ
RRRSKINDRFLPEDARLPAAAGEADAGAGAASDEPAAAAAAAASVPRRHRNVQHQPRRRRTPGR
GCRRQGRADAVRSLGPARRRRRRAPGRRTRAPPPPPPPPVDAPLRRRRAGGRHRGEAAAGEEGA
NRGRRVHGLWLQI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021