Detail information of AT2G03390_circ_g.1


General Information
CircRNA Name AT2G03390_circ_g.1
ID in PlantcircBase ath_circ_012672
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1031992-1032090  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method circRNA_finder
Parent gene AT2G03390
Parent gene annotation Clp protease adapter protein ClpF, chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G03390.4:1
AT2G03390.2:1
AT2G03390.3:1
AT2G03390.5:1
AT2G03390.6:1
AT2G03390.7:1
AT2G03390.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCCAAATCCAGCTGAAAGAAAAAGATCAATATATCTTCATTAGCACTcatcttgaaagagat
aaaaaccctgcatttagtcttaacctgtacacgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTTGAAAGAGATAAAAACCCTGCATTTAGTCTTAACCTGTACACGAGTAGCCAAATCCAGC
TGAAAGAAAAAGATCAATATATCTTCATTAGCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.15151515
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017