Plant Circular RNA Database

Detail information of Os02g0517531_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os02g0517531_circ_g.5
					
						ID in PlantcircBase
						osa_circ_014791
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 18771796-18774964  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0517531						
					
						Parent gene annotation
						
							Nucleotide-binding, alpha-beta plait domain containing protein. 
(Os02t0517531-01);Similar to Mei2-like protein. (Os02t0517531-02
)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0517531_circ_g.6 Os02g0517531_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0517531-01:7

General Information
CircRNA Name	Os02g0517531_circ_g.5
ID in PlantcircBase	osa_circ_014791
Alias	NA
Organism	Oryza sativa
Position	chr2: 18771796-18774964 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0517531
Parent gene annotation	Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0517531-01);Similar to Mei2-like protein. (Os02t0517531-02 )
Parent gene strand	+
Alternative splicing	Os02g0517531_circ_g.6 Os02g0517531_circ_g.7
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0517531-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCATAAAGTGGGTTCCGGCA
ACCTCAATGGACATTCATTTGATCGTGCGGAAGGAGgaagcaagtctgttgcatcttcaccaat
tgaaaaacctcaacctattgggacaaggatggctggtcgactagaacttctacaaccatataaa
ctaagaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1716
Transcript exons: 18771796-18772116,18772607-18773025,18773111-18773269,18
773405-18773521,18773588-18773736,18774335-18774432,1877
4512-18774964
GAAGCAAGTCTGTTGCATCTTCACCAATTGAAAAACCTCAACCTATTGGGACAAGGATGGCTGG
TCGACTAGAACTTCTACAACCATATAAACTAAGAGACCAGGGAGCTGCATTTAGCCTTGAGCAC
AAGCTATTCGGTCAAGAGAGGCATGCTAACTTGCCACCATCTCCTTGGAGACCTGATCAAGAAA
CTGGCCGCCAAACTGATTCATCTTTGAAGTCGGCAGCTTTATTTTCTGATGGGAGGATTAATCC
GAATGGTGCCTATAACGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAA
TTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATG
TTGATGATGAGCCCTTTGAGTTGACCGAGGAAATTGAGGCCCAAATAATTGGAAATCTTCTTCC
TGATGATGATGACCTGTTATCAGGTGTTGTTGATGAAGTTGGGTATCCAACCAACGCTAACAAC
CGGGATGATGCTGATGATGATATATTCTACACTGGAGGCGGGATGGAACTCGAAACTGATGAAA
ATAAAAAACTGCAAGAATTTAATGGCAGTGCTAATGATGGAATTGGTTTGTTAAATGGTGTGTT
GAATGGTGAACATCTATACCGGGAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGT
AATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGCATTTCGGAGATATCCGTGCCCTTTATA
CTGCCTGTAAACATCGTGGTTTTGTGATGATATCTTACTATGATATAAGGTCAGCGCTGAATGC
CAAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCG
AAGGACAATCCTTCGGAGAAAGATATTAACCAGGGAACTATTGTACTTTTTAACGTTGACCTAT
CTTTAACAAATGATGATCTACATAAGATCTTTGGTGACTATGGTGAAATAAAGGAGATTCGTGA
CACTCCACAGAAGGGTCATCACAAAATAATAGAATTTTATGATGTCAGAGCAGCTGAAGCTGCA
CTTCGTGCATTAAACAGGAATGATATTGCAGGCAAGAAAATCAAATTGGAGACCAGCCGTCTGG
GTGCTGCTAGGCGCTTGTCGCAGCATATGTCTTCAGAATTGTGTCAGGAAGAGTTTGGTGTATG
CAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGGTTCTACTAATTTGGCA
ACAATAACTTCAACTGGTCATGAAAATGGAAGTATCCAGGGTATGCATTCTGGACTTCAGACAT
CAATAAGCCAGTTCAGAGAAACATCTTTTCCAGGCCTATCTTCTACCATACCACAAAGTTTGTC
CACTCCAATTGGAATTTCATCCGGTGCAACTCATAGTAACCAGGCTGCCCTTGGTGAGATCAGC
CAATCTCTAGGTCGGATGAATGGGCATATGAACTATAGTTTTCAGGGCATGAGTGCTCTTCATC
CTCATTCTCTGCCTGAAGTCCACAATGGAGTGAACAATGGTGTCCCTTACAACTTAAACAGCAT
GGCACAAGTTGTCAATGGAACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCAT
AAAGTGGGTTCCGGCAACCTCAATGGACATTCATTTGATCGTGCGGAAGGAG
						
					

						Genomic sequence
						
							GAAGCAAGTCTGTTGCATCTTCACCAATTGAAAAACCTCAACCTATTGGGACAAGGATGGCTGG
TCGACTAGAACTTCTACAACCATATAAACTAAGAGACCAGGGAGCTGCATTTAGCCTTGAGCAC
AAGCTATTCGGTCAAGAGAGGCATGCTAACTTGCCACCATCTCCTTGGAGACCTGATCAAGAAA
CTGGCCGCCAAACTGATTCATCTTTGAAGTCGGCAGCTTTATTTTCTGATGGGAGGATTAATCC
GAATGGTGCCTATAACGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAA
TGTGAGTGGTTTTTCTTTATCATTTGCATTTGCTTCATCAAAATGCTTGATTCTATGAAACACA
GACTCGAGAAATTTCCATTCCATTGATAGTAAATGTGCTGAAATATACCATCACATGACATATG
TATTGGCAACTACAACGCTTCCTTACGATCTTACATTCTATACTTAATGCTTCTCATGAATGAA
TAGAAATGTACAAAAGTAAAACAAAAAATACAACTGAAATGAAAGGGTAGTAAAATGAAATGAC
TTTCATTCCCTTCCCCTTTTTCCATAAGAATCTTGCCTCCTTTATCTCCTGTTTCTTTCTAGTG
GCTAAAAGAATCAATCCACTTTAGTTTGGTATCGTAGTCCGTCTGTTATTCTTGTACATTCTTT
TGCCAAAAAAAAGTCTGCACTCTGGTTCAACCTTTATTCTATTGTAATATGTTATCTCCAATTT
CCAATCATTGACCACTGTCTGATTTTATTTGTAACCTGTGCAGTGAGATTAACATCCAAGAATG
GTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATGTTGATGATGAGCCCTTTGAGTT
GACCGAGGAAATTGAGGCCCAAATAATTGGAAATCTTCTTCCTGATGATGATGACCTGTTATCA
GGTGTTGTTGATGAAGTTGGGTATCCAACCAACGCTAACAACCGGGATGATGCTGATGATGATA
TATTCTACACTGGAGGCGGGATGGAACTCGAAACTGATGAAAATAAAAAACTGCAAGAATTTAA
TGGCAGTGCTAATGATGGAATTGGTTTGTTAAATGGTGTGTTGAATGGTGAACATCTATACCGG
GAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGTAATGTTGAGGACTCTGAATTGA
AGCTCCTATTTGAGGTTAGTTACTTATTTCTTCTTCTTTGAATCACTCTTCTGTTACAACAGAT
TTGACATCTGAGAAGCCATCTGTTCTTCTATGCAGCATTTCGGAGATATCCGTGCCCTTTATAC
TGCCTGTAAACATCGTGGTTTTGTGATGATATCTTACTATGATATAAGGTCAGCGCTGAATGCC
AAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCGA
AGGTAACCATCAAATCATCAATTGCCACTTAACTGAAAATGCTTATCTGCATTTTCTGTTGCCT
GTTCTTGTGCTTAGAATGTTATTATTCTAGATATTCACTAAAATTGAGCACATTTGCTTTTCTT
TCCCCACAGGACAATCCTTCGGAGAAAGATATTAACCAGGGAACTATTGTACTTTTTAACGTTG
ACCTATCTTTAACAAATGATGATCTACATAAGATCTTTGGTGACTATGGTGAAATAAAGGAGGT
ACGATATTTCATTTGCTGACTACTATTATAGCTAGAAAGTATGACTCACTAGTTCTATTTGCAG
ATTCGTGACACTCCACAGAAGGGTCATCACAAAATAATAGAATTTTATGATGTCAGAGCAGCTG
AAGCTGCACTTCGTGCATTAAACAGGAATGATATTGCAGGCAAGAAAATCAAATTGGAGACCAG
CCGTCTGGGTGCTGCTAGGCGGTAAGTCATTTGGGTCTTGTCAACAGTGATAATACTCTGTTTG
CTGTTTTCTTTTTAGTTCTTACTACTACTTTCTTCATCACTTTTATAACATACATATTCACCAT
TTTAACATTTTTGACATACTAGCTGAATGCCCATACATTGCAATGGGAATTAATTATTAGAGAA
CCACACTGCACACTCTAAAGCCTCAAAAATTAATATAAAACTATCCTCAATGTAAATCTTAGGG
TCATATTTTTTGTCGTCATTTTCACCTCCAATTTGTTTTCCCTGTTAGACGGCTTGAGGTTAGG
AAAGGGACAAAAGTCCACCTACCTCACTGTTTGGGGGACTCACATAGCAGTGGTGGTGGGTGGT
GGGTGGTGGCAGTGGTAGAGTATAGAGTATATATTTTGAATGCATAGTGTATCTTCTTTTATGT
TTGAGTTTCTTATCCACATAATGTTCATGCTGAGCTGTGCAGGAATAGTTTAGTTGAATGCAGC
ATATTGAATAAACGAAAAAAATGTCAAACATGTTGGTAGAATGGCATTTCTCTGAGTATTTTAA
TTGTAGCTATTGCTTTGACTGATTTCAATGCTCTCTATCACAGCTTGTCGCAGCATATGTCTTC
AGAATTGTGTCAGGAAGAGTTTGGTGTATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCA
ATTGCTTCGTTTGGTATGCTGTTTTCCTTTTTCATCTCAATGTATGTTTTGCTGATAGGTGCAT
TTTCTGACACGGATGGTTATATTGCAAGGTTCTACTAATTTGGCAACAATAACTTCAACTGGTC
ATGAAAATGGAAGTATCCAGGGTATGCATTCTGGACTTCAGACATCAATAAGCCAGTTCAGAGA
AACATCTTTTCCAGGCCTATCTTCTACCATACCACAAAGTTTGTCCACTCCAATTGGAATTTCA
TCCGGTGCAACTCATAGTAACCAGGCTGCCCTTGGTGAGATCAGCCAATCTCTAGGTCGGATGA
ATGGGCATATGAACTATAGTTTTCAGGGCATGAGTGCTCTTCATCCTCATTCTCTGCCTGAAGT
CCACAATGGAGTGAACAATGGTGTCCCTTACAACTTAAACAGCATGGCACAAGTTGTCAATGGA
ACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCATAAAGTGGGTTCCGGCAACC
TCAATGGACATTCATTTGATCGTGCGGAAGGAG
						
					

			
		

Sequences
Splice junction sequence	GGAACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCATAAAGTGGGTTCCGGCA ACCTCAATGGACATTCATTTGATCGTGCGGAAGGAGgaagcaagtctgttgcatcttcaccaat tgaaaaacctcaacctattgggacaaggatggctggtcgactagaacttctacaaccatataaa ctaagaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1716 Transcript exons: 18771796-18772116,18772607-18773025,18773111-18773269,18 773405-18773521,18773588-18773736,18774335-18774432,1877 4512-18774964 GAAGCAAGTCTGTTGCATCTTCACCAATTGAAAAACCTCAACCTATTGGGACAAGGATGGCTGG TCGACTAGAACTTCTACAACCATATAAACTAAGAGACCAGGGAGCTGCATTTAGCCTTGAGCAC AAGCTATTCGGTCAAGAGAGGCATGCTAACTTGCCACCATCTCCTTGGAGACCTGATCAAGAAA CTGGCCGCCAAACTGATTCATCTTTGAAGTCGGCAGCTTTATTTTCTGATGGGAGGATTAATCC GAATGGTGCCTATAACGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAA TTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATG TTGATGATGAGCCCTTTGAGTTGACCGAGGAAATTGAGGCCCAAATAATTGGAAATCTTCTTCC TGATGATGATGACCTGTTATCAGGTGTTGTTGATGAAGTTGGGTATCCAACCAACGCTAACAAC CGGGATGATGCTGATGATGATATATTCTACACTGGAGGCGGGATGGAACTCGAAACTGATGAAA ATAAAAAACTGCAAGAATTTAATGGCAGTGCTAATGATGGAATTGGTTTGTTAAATGGTGTGTT GAATGGTGAACATCTATACCGGGAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGT AATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGCATTTCGGAGATATCCGTGCCCTTTATA CTGCCTGTAAACATCGTGGTTTTGTGATGATATCTTACTATGATATAAGGTCAGCGCTGAATGC CAAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCG AAGGACAATCCTTCGGAGAAAGATATTAACCAGGGAACTATTGTACTTTTTAACGTTGACCTAT CTTTAACAAATGATGATCTACATAAGATCTTTGGTGACTATGGTGAAATAAAGGAGATTCGTGA CACTCCACAGAAGGGTCATCACAAAATAATAGAATTTTATGATGTCAGAGCAGCTGAAGCTGCA CTTCGTGCATTAAACAGGAATGATATTGCAGGCAAGAAAATCAAATTGGAGACCAGCCGTCTGG GTGCTGCTAGGCGCTTGTCGCAGCATATGTCTTCAGAATTGTGTCAGGAAGAGTTTGGTGTATG CAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCAATTGCTTCGTTTGGTTCTACTAATTTGGCA ACAATAACTTCAACTGGTCATGAAAATGGAAGTATCCAGGGTATGCATTCTGGACTTCAGACAT CAATAAGCCAGTTCAGAGAAACATCTTTTCCAGGCCTATCTTCTACCATACCACAAAGTTTGTC CACTCCAATTGGAATTTCATCCGGTGCAACTCATAGTAACCAGGCTGCCCTTGGTGAGATCAGC CAATCTCTAGGTCGGATGAATGGGCATATGAACTATAGTTTTCAGGGCATGAGTGCTCTTCATC CTCATTCTCTGCCTGAAGTCCACAATGGAGTGAACAATGGTGTCCCTTACAACTTAAACAGCAT GGCACAAGTTGTCAATGGAACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCAT AAAGTGGGTTCCGGCAACCTCAATGGACATTCATTTGATCGTGCGGAAGGAG
Genomic sequence	GAAGCAAGTCTGTTGCATCTTCACCAATTGAAAAACCTCAACCTATTGGGACAAGGATGGCTGG TCGACTAGAACTTCTACAACCATATAAACTAAGAGACCAGGGAGCTGCATTTAGCCTTGAGCAC AAGCTATTCGGTCAAGAGAGGCATGCTAACTTGCCACCATCTCCTTGGAGACCTGATCAAGAAA CTGGCCGCCAAACTGATTCATCTTTGAAGTCGGCAGCTTTATTTTCTGATGGGAGGATTAATCC GAATGGTGCCTATAACGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAA TGTGAGTGGTTTTTCTTTATCATTTGCATTTGCTTCATCAAAATGCTTGATTCTATGAAACACA GACTCGAGAAATTTCCATTCCATTGATAGTAAATGTGCTGAAATATACCATCACATGACATATG TATTGGCAACTACAACGCTTCCTTACGATCTTACATTCTATACTTAATGCTTCTCATGAATGAA TAGAAATGTACAAAAGTAAAACAAAAAATACAACTGAAATGAAAGGGTAGTAAAATGAAATGAC TTTCATTCCCTTCCCCTTTTTCCATAAGAATCTTGCCTCCTTTATCTCCTGTTTCTTTCTAGTG GCTAAAAGAATCAATCCACTTTAGTTTGGTATCGTAGTCCGTCTGTTATTCTTGTACATTCTTT TGCCAAAAAAAAGTCTGCACTCTGGTTCAACCTTTATTCTATTGTAATATGTTATCTCCAATTT CCAATCATTGACCACTGTCTGATTTTATTTGTAACCTGTGCAGTGAGATTAACATCCAAGAATG GTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATGTTGATGATGAGCCCTTTGAGTT GACCGAGGAAATTGAGGCCCAAATAATTGGAAATCTTCTTCCTGATGATGATGACCTGTTATCA GGTGTTGTTGATGAAGTTGGGTATCCAACCAACGCTAACAACCGGGATGATGCTGATGATGATA TATTCTACACTGGAGGCGGGATGGAACTCGAAACTGATGAAAATAAAAAACTGCAAGAATTTAA TGGCAGTGCTAATGATGGAATTGGTTTGTTAAATGGTGTGTTGAATGGTGAACATCTATACCGG GAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGTAATGTTGAGGACTCTGAATTGA AGCTCCTATTTGAGGTTAGTTACTTATTTCTTCTTCTTTGAATCACTCTTCTGTTACAACAGAT TTGACATCTGAGAAGCCATCTGTTCTTCTATGCAGCATTTCGGAGATATCCGTGCCCTTTATAC TGCCTGTAAACATCGTGGTTTTGTGATGATATCTTACTATGATATAAGGTCAGCGCTGAATGCC AAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCGA AGGTAACCATCAAATCATCAATTGCCACTTAACTGAAAATGCTTATCTGCATTTTCTGTTGCCT GTTCTTGTGCTTAGAATGTTATTATTCTAGATATTCACTAAAATTGAGCACATTTGCTTTTCTT TCCCCACAGGACAATCCTTCGGAGAAAGATATTAACCAGGGAACTATTGTACTTTTTAACGTTG ACCTATCTTTAACAAATGATGATCTACATAAGATCTTTGGTGACTATGGTGAAATAAAGGAGGT ACGATATTTCATTTGCTGACTACTATTATAGCTAGAAAGTATGACTCACTAGTTCTATTTGCAG ATTCGTGACACTCCACAGAAGGGTCATCACAAAATAATAGAATTTTATGATGTCAGAGCAGCTG AAGCTGCACTTCGTGCATTAAACAGGAATGATATTGCAGGCAAGAAAATCAAATTGGAGACCAG CCGTCTGGGTGCTGCTAGGCGGTAAGTCATTTGGGTCTTGTCAACAGTGATAATACTCTGTTTG CTGTTTTCTTTTTAGTTCTTACTACTACTTTCTTCATCACTTTTATAACATACATATTCACCAT TTTAACATTTTTGACATACTAGCTGAATGCCCATACATTGCAATGGGAATTAATTATTAGAGAA CCACACTGCACACTCTAAAGCCTCAAAAATTAATATAAAACTATCCTCAATGTAAATCTTAGGG TCATATTTTTTGTCGTCATTTTCACCTCCAATTTGTTTTCCCTGTTAGACGGCTTGAGGTTAGG AAAGGGACAAAAGTCCACCTACCTCACTGTTTGGGGGACTCACATAGCAGTGGTGGTGGGTGGT GGGTGGTGGCAGTGGTAGAGTATAGAGTATATATTTTGAATGCATAGTGTATCTTCTTTTATGT TTGAGTTTCTTATCCACATAATGTTCATGCTGAGCTGTGCAGGAATAGTTTAGTTGAATGCAGC ATATTGAATAAACGAAAAAAATGTCAAACATGTTGGTAGAATGGCATTTCTCTGAGTATTTTAA TTGTAGCTATTGCTTTGACTGATTTCAATGCTCTCTATCACAGCTTGTCGCAGCATATGTCTTC AGAATTGTGTCAGGAAGAGTTTGGTGTATGCAAACTGGGGAGTCCAAGCACAAGTAGCCCTCCA ATTGCTTCGTTTGGTATGCTGTTTTCCTTTTTCATCTCAATGTATGTTTTGCTGATAGGTGCAT TTTCTGACACGGATGGTTATATTGCAAGGTTCTACTAATTTGGCAACAATAACTTCAACTGGTC ATGAAAATGGAAGTATCCAGGGTATGCATTCTGGACTTCAGACATCAATAAGCCAGTTCAGAGA AACATCTTTTCCAGGCCTATCTTCTACCATACCACAAAGTTTGTCCACTCCAATTGGAATTTCA TCCGGTGCAACTCATAGTAACCAGGCTGCCCTTGGTGAGATCAGCCAATCTCTAGGTCGGATGA ATGGGCATATGAACTATAGTTTTCAGGGCATGAGTGCTCTTCATCCTCATTCTCTGCCTGAAGT CCACAATGGAGTGAACAATGGTGTCCCTTACAACTTAAACAGCATGGCACAAGTTGTCAATGGA ACCAACTCGAGGACAGCTGAAGCTGTGGACAACAGACATCTCCATAAAGTGGGTTCCGGCAACC TCAATGGACATTCATTTGATCGTGCGGAAGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.222994538

Conservation Information
Conserved circRNAs	NA
PMCS	0.222994538

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							18774864-18771864(+)
18771853-18774961(+)
						
					

						Potential amino acid sequence
						
							MEPTRGQLKLWTTDISIKWVPATSMDIHLIVRKEEASLLHLHQLKNLNLLGQGWLVD*(+)
MAGRLELLQPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGR
INPNGAYNENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGN
LLPDDDDLLSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLN
GVLNGEHLYREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSA
LNAKMELQNKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKE
IRDTPQKGHHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEF
GVCKLGSPSTSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQ
SLSTPIGISSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNL
NSMAQVVNGTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGR
LELLQPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPN
GAYNENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPD
DDDLLSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLN
GEHLYREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAK
MELQNKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDT
PQKGHHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCK
LGSPSTSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLST
PIGISSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMA
QVVNGTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGRLELL
QPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPNGAYN
ENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPDDDDL
LSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLNGEHL
YREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQ
NKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKG
HHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCKLGSP
STSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGI
SSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMAQVVN
GTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGRLELLQPYK
LRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPNGAYNENGL
FSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPDDDDLLSGV
VDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLNGEHLYREQ
PSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQNKAL
RRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKGHHKI
IEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCKLGSPSTSS
PPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGISSGA
THSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMAQVVNGTNS
RTAEAVDNRHLHKVGSGNLNGHSFDRAEG(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	18774864-18771864(+) 18771853-18774961(+)
Potential amino acid sequence	MEPTRGQLKLWTTDISIKWVPATSMDIHLIVRKEEASLLHLHQLKNLNLLGQGWLVD*(+) MAGRLELLQPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGR INPNGAYNENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGN LLPDDDDLLSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLN GVLNGEHLYREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSA LNAKMELQNKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKE IRDTPQKGHHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEF GVCKLGSPSTSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQ SLSTPIGISSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNL NSMAQVVNGTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGR LELLQPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPN GAYNENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPD DDDLLSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLN GEHLYREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAK MELQNKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDT PQKGHHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCK LGSPSTSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLST PIGISSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMA QVVNGTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGRLELL QPYKLRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPNGAYN ENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPDDDDL LSGVVDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLNGEHL YREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQ NKALRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKG HHKIIEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCKLGSP STSSPPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGI SSGATHSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMAQVVN GTNSRTAEAVDNRHLHKVGSGNLNGHSFDRAEGGSKSVASSPIEKPQPIGTRMAGRLELLQPYK LRDQGAAFSLEHKLFGQERHANLPPSPWRPDQETGRQTDSSLKSAALFSDGRINPNGAYNENGL FSSSVSDIFDKKLRLTSKNGLVGQSIEKVDLNHVDDEPFELTEEIEAQIIGNLLPDDDDLLSGV VDEVGYPTNANNRDDADDDIFYTGGGMELETDENKKLQEFNGSANDGIGLLNGVLNGEHLYREQ PSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQNKAL RRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKGHHKI IEFYDVRAAEAALRALNRNDIAGKKIKLETSRLGAARRLSQHMSSELCQEEFGVCKLGSPSTSS PPIASFGSTNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGISSGA THSNQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMAQVVNGTNS RTAEAVDNRHLHKVGSGNLNGHSFDRAEG(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0517531_circ_g.5

Address

Any questions?

Supported by