Detail information of Os03g0352400_circ_g.3


General Information
CircRNA Name Os03g0352400_circ_g.3
ID in PlantcircBase osa_circ_019838
Alias Os_ciR8508
Organism Oryza sativa
Position chr3: 13229632-13229827  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0352400
Parent gene annotation Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1).
(Os03t0352400-01)
Parent gene strand +
Alternative splicing Os03g0352400_circ_g.2 Os03g0352400_circ_g.4 Os03g0352400_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0352400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTTTCCAGGGATCACTTCTTTCAGTGTTACGGCAGTTTGCACGCCTGAAGAGTGACAAACA
AGCTATATCTGTTGGTTTTGTTGGATACCCCAATcattccatgcaagcatcaacagttcatttg
gcaaagtaagctagcagaatcctgaagaagttcattgtttcaccataaatgaccccttacgcat
ttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTCCATGCAAGCATCAACAGTTCATTTGGCAAAGTAAGCTAGCAGAATCCTGAAGAAGTTCA
TTGTTTCACCATAAATGACCCCTTACGCATTTGAATCTTTTCCAGGGATCACTTCTTTCAGTGT
TACGGCAGTTTGCACGCCTGAAGAGTGACAAACAAGCTATATCTGTTGGTTTTGTTGGATACCC
CAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.266174235
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015