Detail information of Os10g0485300_circ_g.1


General Information
CircRNA Name Os10g0485300_circ_g.1
ID in PlantcircBase osa_circ_007194
Alias NA
Organism Oryza sativa
Position chr10: 18345566-18346637  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0485300
Parent gene annotation Hypothetical conserved gene. (Os10t0485300-01)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues shoot, root, seed
Exon boundary   No-No
Splicing signals   CA-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGCCCTTATGTTCTGTAGTGCATGCTTATCCATTTCTATGTTTTCTTTTTCTTCTTTCCAT
CTGCACAAAAGAATGCCATCAACTGATCCTTTAAAGgttagtatcgcaaagtttttacttatgt
ttcttttgtatcgctatattatatgcatgcaattatgaaatacctattatgtacctgttgccat
tcgagtta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1072
Transcript exons: 18345566-18346637
GTTAGTATCGCAAAGTTTTTACTTATGTTTCTTTTGTATCGCTATATTATATGCATGCAATTAT
GAAATACCTATTATGTACCTGTTGCCATTCGAGTTAATAATTCTGGACCAGGTATTAGAGAGAA
AACAGACCAGTAAATCAGAATAGGTACAATGGATTCAAGTTAATTTAGCTCAACTGCTCAAGCA
TTAGCCTGAGAGGTTCCTATTCATTTAAAATTATTATATGTAACCATTTCGAGTCATTTCTAGC
ATTCTAGCAATGGCTTGCTGTATGTACACTAAATCTACTAGCAAAATGCCCAAGCTTTGCTACA
GGACAGAAGAAAAAAATCATAATATGTCATAGCTAAATATTTTTTTATTCAAATATCTTAGTAT
CACTTGTTTGAACCAAATGTTGGACTATTCCACTATATTAGAAAATATCAGGGGGAAATTTGTA
AAAACTGCAAAAACAATGGCAGATTCACTGCCACCATCACTAGAGGCTTTTAAAAAGAGTATAG
ATGTTTCCCTGTTATTACAGCATAAGAATAACAATTTGATTCCTCTCGTGTTTTAAGCAAGCAA
GCATGATAATTAAATTATATTTCAAGCAAAATTTGACCATTTTAGTTACTTATCCTGACGGTGG
CATTAAGGCTCATACTATACATATAATAATAATTTTAAATGAATGGTTTAGAGGTTGTGCAAGT
CCACACTGTAATTTCTACTTTGATGTCTTGTGGCCTATGTTGTTTGTCTGGTGAATGCCACAGT
TAGAACTTGTTTGAGACCGAGCATGGCACCTATGCTCGATCAGGAGAATCTATCCTCAGGCTCC
TCAAGACCTGAACCACTTCTGTTTTTAGAATGCGTGGTGTGATGAGGAAGGAATAATAATAAAC
ATAAAATATAAGTGTGCTGTTATGAAGGTTCAGCTGTATGCATGTAGTATTTAAGTGTTCTGTA
AGTGTTCTATTTTTTTGCCCTTATGTTCTGTAGTGCATGCTTATCCATTTCTATGTTTTCTTTT
TCTTCTTTCCATCTGCACAAAAGAATGCCATCAACTGATCCTTTAAAG

Genomic sequence GTTAGTATCGCAAAGTTTTTACTTATGTTTCTTTTGTATCGCTATATTATATGCATGCAATTAT
GAAATACCTATTATGTACCTGTTGCCATTCGAGTTAATAATTCTGGACCAGGTATTAGAGAGAA
AACAGACCAGTAAATCAGAATAGGTACAATGGATTCAAGTTAATTTAGCTCAACTGCTCAAGCA
TTAGCCTGAGAGGTTCCTATTCATTTAAAATTATTATATGTAACCATTTCGAGTCATTTCTAGC
ATTCTAGCAATGGCTTGCTGTATGTACACTAAATCTACTAGCAAAATGCCCAAGCTTTGCTACA
GGACAGAAGAAAAAAATCATAATATGTCATAGCTAAATATTTTTTTATTCAAATATCTTAGTAT
CACTTGTTTGAACCAAATGTTGGACTATTCCACTATATTAGAAAATATCAGGGGGAAATTTGTA
AAAACTGCAAAAACAATGGCAGATTCACTGCCACCATCACTAGAGGCTTTTAAAAAGAGTATAG
ATGTTTCCCTGTTATTACAGCATAAGAATAACAATTTGATTCCTCTCGTGTTTTAAGCAAGCAA
GCATGATAATTAAATTATATTTCAAGCAAAATTTGACCATTTTAGTTACTTATCCTGACGGTGG
CATTAAGGCTCATACTATACATATAATAATAATTTTAAATGAATGGTTTAGAGGTTGTGCAAGT
CCACACTGTAATTTCTACTTTGATGTCTTGTGGCCTATGTTGTTTGTCTGGTGAATGCCACAGT
TAGAACTTGTTTGAGACCGAGCATGGCACCTATGCTCGATCAGGAGAATCTATCCTCAGGCTCC
TCAAGACCTGAACCACTTCTGTTTTTAGAATGCGTGGTGTGATGAGGAAGGAATAATAATAAAC
ATAAAATATAAGTGTGCTGTTATGAAGGTTCAGCTGTATGCATGTAGTATTTAAGTGTTCTGTA
AGTGTTCTATTTTTTTGCCCTTATGTTCTGTAGTGCATGCTTATCCATTTCTATGTTTTCTTTT
TCTTCTTTCCATCTGCACAAAAGAATGCCATCAACTGATCCTTTAAAG
Conservation Information
Conserved circRNAs osi_circ_008535
PMCS 0.490893872
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017