Detail information of AT2G36120_circ_g.5


General Information
CircRNA Name AT2G36120_circ_g.5
ID in PlantcircBase ath_circ_016757
Alias Ath_circ_FC5635
Organism Arabidpsis thaliana
Position chr2: 15165720-15165909  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G36120
Parent gene annotation Glycine-rich protein DOT1
Parent gene strand +
Alternative splicing AT2G36120_circ_g.1 AT2G36120_circ_g.2 AT2G36120_circ_g.3 AT2G36120_circ_g.4
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered AT2G36120.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGAGGCGGAGAAGCTGGTGGGCATGGCGGAGGTGGAGGAGGCGGAGCAGGCGGCGGTGGAGGT
GGTGGTGGTGGTGCACATGGTGGAGGATACGggtggtggacatggtggtggtgctggcggagga
ggaggtggtggccctggaggaggctacggaggtggaagcggtgaaggtggtggagctggata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGTGGACATGGTGGTGGTGCTGGCGGAGGAGGAGGTGGTGGCCCTGGAGGAGGCTACGGAG
GTGGAAGCGGTGAAGGTGGTGGAGCTGGATACGGAGGCGGAGAAGCTGGTGGGCATGGCGGAGG
TGGAGGAGGCGGAGCAGGCGGCGGTGGAGGTGGTGGTGGTGGTGCACATGGTGGAGGATACG
Conservation Information
Conserved circRNAs NA
PMCS 0.364791235
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a