Detail information of Zm00001d015152_circ_g.1


General Information
CircRNA Name Zm00001d015152_circ_g.1
ID in PlantcircBase zma_circ_001994
Alias circ2118
Organism Zea mays
Position chr5: 77112589-77116100  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d015152
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand +
Alternative splicing Zm00001d015152_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d015152_T006:6
Zm00001d015152_T003:6
Zm00001d015152_T002:6
Zm00001d015152_T005:4
Zm00001d015152_T004:3
Zm00001d015152_T007:3
Zm00001d015152_T001:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCTTGAAGGAGCTGACCATGTGCCAGACCTTGATCCTAGCCATGTTATAGAGTTGAAGATAT
TAGGACTATATTAAACATAGCTGCATATTACATCAGggacctggtttttttatcaaatgcttga
caaaatgcttgcttggtgatgtctggctatgatttgggtcctgtttatcatgcagttggcttct
catggcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACCTGGTTTTTTTATCAAATGCTTGACAAAATGCTTGCTTGGTGATGTCTGGCTATGATTTG
GGTCCTGTTTATCATGCAGTTGGCTTCTCATGGCACTCAAACAGAAGAGACGATGCAGTTTGTG
CCCCATTGTGATCATGCAGAAGTGTCAGATTCACAGTCAACAAGTTCACAACTAAACCTGATAG
AGAGATCAACAGAGCATCTAGCCTCATGTGAAATCAACCCAGTGAGCGTTGATGATGACAACGA
CAATGAACATATCGATGCCAATGAAGAAACTCACCTTGTTATTCAGGACGTTCCTCAATGCCGG
ATTTGCCTTGATAGTGAAGGTTTGCTCTTTGACTATCAGTGTTCTTAAGGCGCCTAGGCGAGCA
AGTGCAGCAGACAACCGCCTTAGCGCCTAGGCGACGCCTAGGCGGGTAAGGCGAGCAAGGCGGC
CAGTTTTGCCCGAGCGCTTGGACGCCTAGGCGTTGCCTAGGCGACGCCTTAAGAATAGTGGTGA
CTATTAGAACTTTTCTTAGATAGATAGTTGTTAAGGAATTTGAAATGCCTTGTTATTTTTTAAT
ATTTAATTCATGTTTGTTTTGTTGCATACCTGCCACGGAGTAGGTGATGACTTGATTGCGCCCT
GCCGTTGCAAGGGAACGCAGAAGTATGTCCATAGGTCCTGTCTTGATAACTGGAGATCAACAAA
GGTCTGGATTCTAGAGCATCTATTCTCTAAACTGCAGACTTAAAAGATGCTTCCTAATCATCAT
TATTAGTCTAGTTGGCTCTAACCTAGTATGTCTGTAACACATTACCCAGGAAGGTTTTGCATTT
TCACATTGCACTGAATGTCGAGCTGCATTCTTTCTTCGTGCAAATGTTCCTCCAGATCGATGGT
GGTTAAGATTGAAGTTTCAACTTCTGGTTGTTAGGGATCACACACTAATCTTCTTTATTGTGCA
ACTGGTGAGATACTCACGCCTTTTATAGACCATGGAAACAGATCCAGTAATTCTCTATTGACAT
ATTTTGAGCTGAATCATTTTTTCACTTTCTTTTCCAGATTTCATTGATTTAGCTGAAGCTAGAA
ATACATAACAAATTTTCTGTTTGCTGCATTATTAAAAAAAACTCGGCCGGAGTGGGAAAGACCG
TCCTCCCGGTATTATACTAAGAAGAGACCGAAACATGGTCCCGGCCGAGAAAATCCCCGAACCC
TGGCTTCCATCACCAGCGGGCTGTCACCGTCCACTCTGCAACAGCCCGGCTGGAGGGTGGCGCG
CATGACGTAACCCGGGAACGGGCGGGGCACAACGAGTGGTTTTTAACCAAGCCAGAAATTCGCC
CCCAAAGGGGGTCGAACCTGAAACCTGAAGGTGTTACTCGGAGGCCTTAACCATTAAGCTGGAG
GCCCTTTCGCTTTGCTGCATTATTTAGAAGCATCATGCATGATTAAAAATATTTGCAGCTTGGT
TTTCTACTCGACTGGAGAGGGAAAGACTGCCCTCCCGATATTGTATTAAGAAGCGACCGAAACA
TGGTCTCGACCGAGAAAATTCCTGAACCTTGGCCCCCATCACTAGTGGGTCGTCACCGCCCACT
CGCAACAGCCCATCCAGAGGGTGGCGCGCAGGACGTAACCCGGGAGCGGGCGAGGCACAATGAT
GGGATTTTTTTAATCAAGCCAGAAATTCGCCCCTCGAGGGGGGTCGAACCCGAGACCTAGAGTT
GCTACTCGAAAGCCTTAACCATTACGCTAGAGGCCCTTTCGCGCTTGGTTTTCTACACTTGGTT
CATCTCCTTTCCCTTTCATCCTTGTGGGTTGCTTTGAGCAAGTACATGGTATTCTTTTATGATT
ACATTATGGGAGACCAACACACAATATTTTACATGATCAAGAAAGAGGCCTCGACGACCATAGT
GAACTGCACACTTATATAGATCTTTTTTTGCTCTTATAATCTTGTTTTTTCTTATTGTCTTTTA
GGTAGTTGCTTTCATGGGTATGGTGATTTACAGATTTTATGGAGATGAACTGCGCGAAATGTTT
GGTTATGAAGAGCACCCATATGCTTTCTATGCCATGGCGAGTAAGTTAATTTAATGATTTTTCA
TAGTGACATCAACATATATATTGTGTGTATATTGTATTTTGGTCTTAACTTTAGTTTGGGAAAT
TTCCTCAACAACTGAAAATCTGAATGAGAACCAATACTTTTGGATTATGTTTTACTGGAACTGC
TTAATGCTGATTTAGATTCAATTTTCAATGCCATATGTTTCATGTAGCTACTATTGGATATGAT
TTGTAATTGATGTCGTCTTAGGTTTCTTACCAATTGTGAGAGAGGACTGGGGAGTGGGGACATG
TACTATCTTGGTGTAGTTCATGATATAGCATATTTGAATCTTAAAGGATCATTCGTTCTGTTTC
ATGTCAATGTGTTATGGTTACACAGGCCTCTAGCGTAATGGTTAAGGCTTCCGAATAGCACCTC
CAGATCCCGGTTTCGATCCTCCTCGGGGGTGAATATCGGGATTGGTTAAAAAAAATCACCTCAC
TGTGCCCCACTCGCTCTCGGGGATCGATATCCTGCGCACCACCCTCCGGCTGGGCTGTTATAGA
GTGGGCAGTTGATCGGCTCGTTAGTGATGGAGGGCCAGGGTTCGGGGGTTTTCTCGGTTGGGGC
CATGTTTTGGTCTTTTCTTTATATAATTCCGGGAGGTCGGTCTTTTCCTCCCTGGTCGAGTTTT
TTTACATAGTGACGTGACACGATCTTGTAGGATTCCACAAATGCATACTAATCTAGTTAGAACT
CTATGGATTTTTTGGCAGTTCATAATTGCAGGTGGACATAGTTACCACAGCAATTTTATGTGCT
CAAGATAAACTAGTGATAAACAGGTTGTTTAAAGCACATAGCTATAACTCTGGCAGACTTGTTG
AGAATGCATTGCTATATGTCTCTCCTTTGTTGTCTTCTAGTAGGACTGTAGGAGTATAACTGAA
CAAAGTTGATTGTAGAAGCACTGATATGCACCTGTACTTTGTCAACTGCTGTATGTTTACATAA
ATTTGAAATTTTACCTGTACTTTACATGAAACTTTTGTCAAGGAAAAAGGTTAATGTTTGAAAA
GTTGTTCAAATTGCAGTACTGGCTATTGTTTTGGTTGGTTTGCTGTATGGGTTCTTCATTGCTA
TAATATGTGGACAGAGGATAACTGAACGGCATTACCATGTTCTTGCAAAGCAAGAGTTAACCAA
GGTCTGTGAAAGGAAGAGGAAAATTCAGCAAGTTGGATTGATTTTCTTTTCCCCTTATGGTTAA
TTTTCTTCTCATTTAGCTAAAACCTGTATTAAATAGTCTGCTTGACATTTGATATTCCGATGCT
GCCAGGAGTATATTGTAGAAGATCTTGAAGGAGCTGACCATGTGCCAGACCTTGATCCTAGCCA
TGTTATAGAGTTGAAGATATTAGGACTATATTAAACATAGCTGCATATTACATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.037900524
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b