Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G23260_circ_g.2 |
ID in PlantcircBase | ath_circ_004018 |
Alias | AT1G23260_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 8257451-8258324 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, CIRI2 |
Parent gene | AT1G23260 |
Parent gene annotation |
UEV1A |
Parent gene strand | - |
Alternative splicing | AT1G23260_circ_g.1 AT1G23260_circ_g.3 |
Support reads | 3 |
Tissues | whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G23260.1:3 AT1G23260.2:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.321861691 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
8258248-8257453(-) |
Potential amino acid sequence |
MDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVV EPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEVPRNFRLLEELERGEKGIGDGTV SYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPET GVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEVPRNFRLLEELERGEKGIGD GTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVN PETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEVPRNFRLLEELERGEKG IGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMA CVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Chu et al., 2017;Zhang et al., 2019 |