Detail information of BGIOSGA033084_circ_g.1


General Information
CircRNA Name BGIOSGA033084_circ_g.1
ID in PlantcircBase osi_circ_002839
Alias 10:15623393|15626383
Organism Oryza sativa ssp. indica
Position chr10: 15623393-15626383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033084
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033084_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033084-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGGACCCAAGCAGCATCTTCAAATGATAGGAGTCCAGTTATTAAAGGATCTAGAAAAGACA
TCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAGgctacttgtggaattcctgagattgctt
ttgcaacattcgaaaacatggaatatggaggtgaaggtatagccatcatttacactggtcttct
tttatggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTACTTGTGGAATTCCTGAGATTGCTTTTGCAACATTCGAAAACATGGAATATGGAGGTGAAG
GTATAGCCATCATTTACACTGGTCTTCTTTTATGGTGTCATTATTTATTTTGTTTACTTTTTAG
TTTATCAACAGCGTGATTTCATGCTATAAATAACTTGTTGAAGAATTGACATGTGCAATCTTGA
TGTTTTATGACTTCATATCCTGGGATTTTGACTAAAGTCTATACTGATTTCACTTTATCATTCT
AGGTTATATGAAACCAGATACCGAGTCCTACAATTGGGTCATACAGGCATTTACTAGGGCTACA
TCCTATGACAGGTACACTTAATAGAGATGTTCTCTGCAATATTTGTTTGCTATGTTCTGTTGGT
TCCTTTTGAATTTAGTCTGTTGTCAACACAGTTATACAATCATGGATTCATGCTGAATTCATTT
TAGCATCAAAGTCAACTGCTTGAACCCAATGATTTGATGATGTAAAATAAGCATACCAATAGCC
ATAGCTCCATGGAGCATGAAGGGAAAGCTCTAAAAGTGGCAACAACTTGTTGTTTCTTATTGGA
TATTATATTCAACAGATAAAACTATTCAGAAGAAGCAAGCTGTGAAAACTGGAAACCATAGCTG
TATCCAGCATTTTTTCCAGTATTCATCAAGATACTTGAAGACAGATATCTTTCACATGACTTAT
TTTTTGTCATTTTCTATATCCCTGCTACATATTTGAATTTTTTTCAGGAGAATGCTATATGTTG
TTTTTTTTTTAAAAAATAATGTGTTTTTGTCTTCAGGGCAGGAGATGTGGCCGAATTACTAGGG
ATGATGGTGGAAGACCACAAACGTATTCAGCCTAATGCAAGAACATATGCGTAAGTACAGAGCT
ACAATCTTACAAAATTATACCAAAGCCACCATAGAATAGTTGATAGTCTACTCTATAATGAGGA
GGCAAGCACACTGTCAAGTCTGACTTCTGAATGTCAATAGCCATTCTTGTTTGCTTACTCTTAT
CCTTGTCAATTTTTTTCTCTTGGAAAACAATGTTCTGATGATCAGCAACTATTGCCAGGTTGTT
AGTGGAATGCTTCACAAAGTACTCTATGGTTAATGAAGCAATAAGGCATTTCCGTGCCTTACGG
AGAATCCCCGGAGGAACAAAAGTTTTATATAATGAAGGAAATTGTGGTGATCCGCTTTCTCTCT
ATCTGCGATCTCTATGCCTTGATGGTGAGCATTGTCCCTTCTGTGCAGTACTTAAGATGGAAAT
GTGGAGTCCTGTGGCATATTCTTATAATTATTCTTGAGTACTGTCTGAAATGGTTGACTTATTC
TTATCATAAGTCCTGTGGCAGACGATGGTATATGGAAGTGGTTATTTTAATTATAATTTCATCC
CTTTCTTTGTGTGCATATGCATAGTTTGTAATACCTTGTGGAGTGATTCCTTTTAACCTCATTA
TTAACTAATTATAAATTCTTACTTTCCTGGTTATAATCTCTTATTTTGACAGCTCTTGGCACTA
GGAACCCATAACATCAAAACACACCCGTGAAAATTACATAGTTATATTTATTACAACAGTAGTT
CCGTACTTCCATTTCTGTATTCTGTACTCAATATATAAATCATTTGTCTTCCATACTTTTAGTT
TTAGGAGACTTTGCACTATTATGAACTTTAAAACTTTCCTGAGCAGGTAACTTATTTTTATAAC
CAGGAAGAGCTGATGAGTTGCTTGAGGCATTAGAGGCAATGTCTAATGATGGTCAGACTATTGC
ACCTAGAGCAATGATCTTAAACAGAAAATATCGCACGTTGGTGAGCACCTGGATAGAACCATTA
CAAGAAGAAGCTGATGTTGGTTTTGAAATTGATTATGTTGCCAGGTATGATTGAGAGGTTTAGG
TTCTTACTTTACTGTTAAAGATGACAAGTCAGTTTTTGTCAATCACATATTCATATTTGCCAAC
AACACTCCATAATTATGTAATGTGCATTAGTTTTTTCATTCATATTGTCTTTGTAGATATATTG
AAGAAGGAGGTCTTACTGGTGAGCGCAAACGCTGGGTGCCTCGAAGAGGCAAAACTCCCTTAGA
TCCAGATGAGTTTGGGTTTGCCTATTCAAATCCAATAGAGACATCATTTAAACAGCGCTGCTTT
GAGGAATTGAAGTTATATCATCGCAAACTTCTAATAACATTGAGAAATGAAGGCCCTGGTATTT
TAGGTGATGTATCTGAAGATGATGTACGAAGAGTTATTGAAAGACTAAAAAAGTTAGTTGTAGG
GCCAAAGAAAAATGTTGTTAAGCCCAAGGCAGCTAGCAAAATGGTAGTATCTGAGTTGAAGACT
GAGCTAGAGGCACAAGGGTTGCCTACAGATGGAACTAGGCAGGTACTTTACCAGAGAGTTCAAA
AGGCTAGGAGAATCAATCGTTCACGTGGTATACCACTTTGGGTTCCTCCTGTGGAAGATGAGGA
AGAGGTAAGTTGACAATATTTACTGCATTAGTCCTATTTGGTGGTGTTATCATGTGAGAAATGT
TACCTGCTATTTTTTGCTGAAGTTTTAAAGTACAACACTATTGATAGGTTGATGAAGAGTTAGA
TGAATTGATTTCACGAATCAAGCTAGAAGATGGGAATACAGAGTTTTGGAAGCGGCGTTTCCTG
GGAGAAACTCGGAATTATCTTTGTGAAGAAGTTAATGATGAAGAAGATGCAGATTTAGATGACG
ATGAGTTGGATGATGATGATGACGACGAAGATGACGACGACGATGATACCACAAAAGGAGAAGA
AGATGAGATCGATGAGGAGGATGCTGTTGAACAAACGGAAAATCAAGCCGGAGATGAAACTAAA
GACAAACCATCGAAAGGACCCAAGCAGCATCTTCAAATGATAGGAGTCCAGTTATTAAAGGATC
TAGAAAAGACATCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 15623441-15626307(-)
15623439-15626380(+)
Potential amino acid sequence MFSNVAKAISGIPQVASGTLFDFFDETDVFSRSFNNWTPII*(-)
MEYGGEGYMKPDTESYNWVIQAFTRATSYDRAGDVAELLGMMVEDHKRIQPNARTYALLVECFT
KYSMVNEAIRHFRALRRIPGGTKVLYNEGNCGDPLSLYLRSLCLDGRADELLEALEAMSNDGQT
IAPRAMILNRKYRTLVSTWIEPLQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPD
EFGFAYSNPIETSFKQRCFEELKLYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPK
KNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWVPPVEDEEEV
DEELDELISRIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDDEDDDDDDT
TKGEEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSSKKSKRVPEA
TCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYDRAGDVAELLGMMVEDHKRIQ
PNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLYNEGNCGDPLSLYLRSLCLDGRADE
LLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEPLQEEADVGFEIDYVARYIEEGGLTGERK
RWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEELKLYHRKLLITLRNEGPGILGDVSEDDVR
RVIERLKKLVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRG
IPLWVPPVEDEEEVDEELDELISRIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDEL
DDDDDDEDDDDDDTTKGEEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEK
TSVSSKKSKRVPEATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYDRAGDVA
ELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLYNEGNCGDPLS
LYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEPLQEEADVGFEIDYV
ARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEELKLYHRKLLITLRNE
GPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLY
QRVQKARRINRSRGIPLWVPPVEDEEEVDEELDELISRIKLEDGNTEFWKRRFLGETRNYLCEE
VNDEEDADLDDDELDDDDDDEDDDDDDTTKGEEDEIDEEDAVEQTENQAGDETKDKPSKGPKQH
LQMIGVQLLKDLEKTSVSSKKSKRVPEATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQA
FTRATSYDRAGDVAELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGT
KVLYNEGNCGDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEP
LQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEEL
KLYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVVSELKTELE
AQGLPTDGTRQVLYQRVQKARRINRSRGIPLWVPPVEDEEEVDEELDELISRIKLEDGNTEFWK
RRFLGETRNYLCEEVNDEEDADLDDDELDDDDDDEDDDDDDTTKGEEDEIDEEDAVEQTENQAG
DETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSSKKSKRVPE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021