Detail information of AAAA02041788.1_circ_ig.1


General Information
CircRNA Name AAAA02041788.1_circ_ig.1
ID in PlantcircBase osi_circ_019011
Alias Chr05:16590685_16600378(MH63RS2), Chr05:16590685_16605276(MH63RS2), Chr05:16590890_16600589(MH63RS2), Chr05:16590890_16605487(MH63RS2), Chr05:16591503_16600781(MH63RS2), Chr05:16591503_16605678(MH63RS2), Chr05:16595582_16605276(MH63RS2), Chr05:16595787_16605487(MH63RS2), Chr05:16596400_16605678(MH63RS2), Chr05:16590685_16600378(MH63RS2), Chr05:16590685_16605276(MH63RS2), Chr05:16590890_16600589(MH63RS2), Chr05:16590890_16605487(MH63RS2), Chr05:16591503_16600781(MH63RS2), Chr05:16591503_16605678(MH63RS2), Chr05:16596400_16605678(MH63RS2)
Organism Oryza sativa ssp. indica
Position chrAAAA02041788.1: 1-4375  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   -GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAATTCGGAATTAAAAATAAGAAATATTAGAAATAGAGTATAGAGTCCATATAGAAATACAA
TTAGTAAATAATATAAATTCGAAATTAAAAATAGGGgaagtagagtataatgtccatatagtaa
tttaaaactaactaaaattcggaataaacataataaaattaaaagtagagtttagagtccgtat
aagaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTAGAGTATAATGTCCATATAGTAATTTAAAACTAACTAAAATTCGGAATAAACATAATAA
AATTAAAAGTAGAGTTTAGAGTCCGTATAAGAAATACAATTTACAAATAACTAAAATTCAAAAT
TAAGAAAAATATGGGAAGAAGAGTTTAAAATCAATATAGGAATACAATTTAGAAGTAACTGAAA
TTTGAAATTAAAAATTAAAGAATATTGAAATATGAGTTTATATAGAAATACAATTTATAAATAG
CTGAAATTCGGAATTATAAAATAAGAAATATTAGACAATAAGGAATATTTTGAATAGCTGGATT
ATAGCAATGCTAGCCGCGCAATCTGTGCGGGCCACCATGCTATTTTTCAACCATTAGATCTATC
TTAAAAACATATCAATTAGATTTATCTATAAAAAGGGCCATCTAATGCCACACACGCAGTAAGT
AGGCCAGGCCCGTCCCTCTTTTTCCTTTTCTTTCTCACTTAGATAAGATCAAAACCAAATTAAT
AATGTTTAATGTTGTTTTGCTGTGCACTAATTTTCTTACTCCTATATACTTTCAAATGTTCCAA
TGACTTGGATTCTTTTTCATAATTATGTAACCTTGATGCTTCCCTGACAGCCCGTTTGGTTGGG
GAGAGTTTTTAGGAGGGATTGGGAGTTTAGAGGGATGAGGCTATTAACTGTTTTGTTTGGTTGG
AAGACATGGGAATTTTGATGGGATAGGGATAGGAAATTGAGGAATGAACTCCCTTCTTTTCAAT
ACCTGGGTAGGGATAGTAACTGGGAGGGAATTCCTCATTTACTTCGCTGAAACAAATCTCAGCC
ATCCGTTTTCATTAATGACCTAATCTCCAACTAAACTCCCTATCAATTTCCACCACCTCTACCA
AACAAGAGACTGGGATGAAAAATCAAATTCTCATCTTAATCTCACGATCAATTCTCTCGTGTAA
ACTTTCAATCCCCTTCCCTCAAGTTGCCAAACAAGACGTGACAGTCAAGTGGAACATTTTGACG
GTCATCTACCAAAGGAAGAAGACAAGTATTGGACGGAGGAGATGGAGCGTTGGATCACCATCGG
ACGGCCCATGTAGCCCAACTCCTCCGCTGCCACGCGACGCCCCAGCCCAAGCCAAAACCAAACC
AAACAAACCCCGTCGTCACCTATCCAAACAGATAAGGCCCCGCGCGCGCGCAAACCAAAGCCTC
TCCATGGACACCACCGCGTCATGGCGCCTCCTCCCCCCGGCCGCCTCCTCGCCGCCGCCCAGGA
GGCAGGCGGCTCTTCTCCGGCGCCACCCGGCGGCCACCACCACCTCCTCCTCCTCCGGCAAGCG
GACGACGAGGCTCCTCTGCCTCCTCCATGACACGGTAACATCCATCTCTCTCGAATCTCCCCGA
TCGATCGATCAGCGCCATTAATCACTTGCCGTGTTTGTTCTTGCCATCCGTTCGGCAGCCTCCT
CCTGCGCCGCCGCCCGCCGCTGACGAGATCAGCTCGCCGCCGCTGCGGAAGCTGGCCGCGGCGC
TGCAGTGCGGCGCCATCTGGGCAGCGGTAAGTTCGATCAAGCAGCTAATTCTTTGCATTTCGGA
TGGATGGATGGATGAATGACCGGCGCTGCAGCGGATTCGCCGCGTGCGTCCGCCATTGATCGCA
GGTTGAGGCCCCGGCGGCGCTGGCGGTGACGGGCGAGGAGGACCTCGACATCCTGGGGATCCTG
CCGACGGTGGCCGCCATCGCCTTCGTTTACCTGTTCGTCTTCCCGGTGAGATCCGGGCCGCCAT
TCTTGGTTTCTTGCGAGGCTAATTCAGAGATCGGGTGTACAGGTTTGTGATGGTTTTTTTTTCC
TTTGTTTCTGCAGCCGATTATCATGAACTGGATGAGGCTGAGGTGGTTCAAGCGCAAGTTCGTC
GAGACGTACCTGCAGTTCATGTTCACGTACCTCTTCTTCCCCGGGTGAGTTGCCTCTTGCTACC
ACGTATGCTTACAAAGAACAAATTAAAGAACAAAATGCGGCATCTTCGAATCGTGAATATATAG
TATTGTAATTACCTTTCAATCTGATTTTCTGTTGAGCATTAATGCAGCAAAGATAATCATCTAG
TGATCTGCTCTATCCCTCTGGACAAAAATTTAAATATATATACATATTTTGCTGTCTTAAGGAG
ATACCCAGAGTTACTAAATTTTACTGCGGTGTAGAATTAATTTTTCTGTTATAAAATTTGGCAT
CTCTCCGTGCATTCTAAGGACCATAAATTTTCTAAAAAGGATTGCAGTATTGCTTTGCCGAAGA
TCATCATATCAATGGAATCGATGCGCATGCCGTTGCCAAATTTTGTTTGTGTGAACCAAATAAC
CGTGAAACTCAAAATTCCCATCTTCAACAACATATATCTCTTGCTGTGAATGGCCTAGTCATAG
TATCAATTGAACCCAATTCCTTGTCTGTGTGCATCTCTATCATTTTGCAGGATGATGTTGTGGG
CACCATTCGTCAACTTCAGGAAGTTCCCAAGGGATCCAACCATGAAGTACCCTTGGTCCAAGCC
AAAGGAAGGCACACCGTTGTTCAAGGACAGATACCCACCTATAGAAACCTACAAGTGATCAGAA
GTACTAGACCGTATTCTTTTCGAAACAAAATAGCATTTCTTTGCATGGATTTGTAAAACATGCA
TGGTGCCACAATCTTCTTGGATGTATCGAGAGCAAAGTGAGATCTCACATAAAAGAAAGGGAAA
TGATAATGATGCAATATTACACTAGCCCAGGCACCGAAGCATATGTTGTGCTTGGGAAAAGGTT
GCTAGATAAGTTGCAGGTGTTGGCAAAATCTAGTACTGGAGTAGCAGCCTGTCTTTCTGTTTCA
CAGTTAAGGCACCGTTTTCTCATGATCATCTTCAAAAAATACTTTCCTACTAGCTTTACACCCC
AATTATAATAAGTGATTAATAACGAACGTCCCAATCTTTCATTGTAAACTAATTCGAAAAAATA
GTAGATTGCAGTTTTTACTAGGTCTAGATTGAGCTTTGACCTTTCACATACTTCGCACAATGTG
ATTTGGAATTCCAATTGGATAAAAACCTTGACCTCTAGGAGTGTGTAAGGAACTGCAAGTCCAA
GTTCTAGATTTAGATATTCCCATATGAGTATTTTGCAATTGAACTGAGTGGTACCAGATTACAG
GTTGTCCTGCCCTTGGCAGAGTTCACAATTCGTTTGAATTTCATCACCCAAAATTCTCCCATAA
CGGCGTGCTTAGCTTCATCAAATTGGTTGTCTCGTTGGGGCTGTCATTTCAACCTTAAAACAAG
ATTGTAAACCTGTCTATTGTTTACATTAAACCCTATTTAGAGGGTGAGTGAAAAAAAATGCCCG
AATTATGGGGTAAAAGGGCATGTGCATTGTTGATTTCACTATGGGGATCCTTAACAAAGATACT
GCTTTCTGAGTTGTGACATTACCCCTCCATAGGACATGGCATATTTTTTTTCGAGGGGACAGGC
AGGGAGCTCCTGCAATTCACTATAGAAGAAGAGAGTTGATCCAGTTTATAAGGGAAACCGAACC
CAAAAATCTTACAACAACACGGTTAATTAAAGAAAAACCGGTAAAAACCCCGACATTGACAAAC
TGAACCTAAGTACAGCTGTCCAACAAGAGATAAACTCCTAAAACGAAGCCTTCAAGAAGGTTAC
GCCGATAAAACGGCGACATCGTCCGATCCTAACGAATCTAGGTTTTCAACCGGAGAAAACTCTT
GAAGTGGAGTTGAACAAGGGCTCCAGTAGCAACGCCTTCAAGAAGGTGAACGGCGCCCAAGGGC
ATCGCCGTTGCTAGCACCGAGAGCGGAGCAAGACTTTCGCCTTGGAGCACCCATCAACCATAGC
ATCCACAACAGAAGACACCAAATGTCACCTGCACACCGAGGGTACCTGCAATAAGGAATATTAG
AAGTAGAGTATAGAGTCCATATAGGAATTTAAAACTAACTAAAATTCGGAATAAAAAGGAGCCT
CGACATTCGCTCTCATGACTTAGAAATTCTCACATTAATCGGAGAAAAAGAAAAGCAGAGTCCA
TATAGAAATACAATTTAGAAATAGCTGAAATTCGGAATTAAAAAATAAGGAATATTAGAAGAGG
AGACTAGAGTCCATGTAGAAATACAATTTAGAAATATTTGAAATTCAGAATTAAAAAATAAGGA
ATATTAGAATAGGAGACTAGAGTCCATATAGAAATACAATTATGAAATAGATAAAATTCGGAAT
TAAAAATAAGAAATATTAGAAATAGAGTATAGAGTCCATATAGAAATACAATTAGTAAATAATA
TAAATTCGAAATTAAAAATAGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2922
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021