Detail information of BGIOSGA016644_circ_g.1


General Information
CircRNA Name BGIOSGA016644_circ_g.1
ID in PlantcircBase osi_circ_014480
Alias Chr04:24889064_24889734(MH63RS2), Chr04:24911207_24911877(ZS97RS2), Chr04:24889064_24889734(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22809690-22810360  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA016644
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016644_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016644-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTACCACTGCTAAGAAACCATTTTATTTACGTTCTGCATTCTTTTGTATAGGTACCATGTTG
GAAGATGAGAATCACCATACATCCTGTTTGTTTGAGgataagattttgcctgatgacaacgaca
aaaccacatacagagtattgggactgcttctgcttggcattgttaggatttattccaagaaagt
ggaatacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAGATTTTGCCTGATGACAACGACAAAACCACATACAGAGTATTGGGACTGCTTCTGCTTG
GCATTGTTAGGATTTATTCCAAGAAAGTGGAATACCTCTGCCATGAATGCAATGAGCTTCTTGG
ATCATATGGATCAGCACATTGCAATGAACTAAGTATCCCAACTGGAGGAGCAACAAATAGAGTT
TCAAAGCAAGCGAAGAAACCTGTTCGCGCAAGAAGATTAGTTGTAAGACAAGAAGGTGCTTACA
AGGTAAAAATACCTATGCAAGCTGTGCGAACAACTAGAGCAGAAACAAGAGCTACTTCACAGAT
AACTGAAGTTCGAGACACACATGCTACACCTGATCTTCCAACTTTCACAATACCCAAAAGATTT
GAGCTTGACTCTTTTGATTTGGGGATTCCTGAAGATAGGTAACAGGTTTTGGTCCTATACTAGT
TTTATTAGCTTGTTGCTTAAAATTGTGGTTTCTGATCTATTTTTAAAACTTTCTTTGTAGGGAT
GATGATGACGTGGATCATCACCAATTGCCACATCAAGGTAGAACTGCTGTGATTGATGTTTTTA
CCACTGCTAAGAAACCATTTTATTTACGTTCTGCATTCTTTTGTATAGGTACCATGTTGGAAGA
TGAGAATCACCATACATCCTGTTTGTTTGAG
Conservation Information
Conserved circRNAs osa_circ_024308
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021