Detail information of BGIOSGA016877_circ_g.3


General Information
CircRNA Name BGIOSGA016877_circ_g.3
ID in PlantcircBase osi_circ_014616
Alias Chr04:28018533_28019836(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26247790-26249093  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016877
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016877_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016877-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTGATCTTCTGGATCGGCGCAATCAGTATCAGAGTGGATGTGAGTCTAGGCAGATCATGTCC
ACCCATGAAATACAAATCTTGTGCTTGCTTTTGGAGggaaatggcagcaaattgcccaaatgca
tgctgtccccgacgttcggtgttttccttgggtcactggttaaccaaaagaccatgatatcctc
agatacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAATGGCAGCAAATTGCCCAAATGCATGCTGTCCCCGACGTTCGGTGTTTTCCTTGGGTCAC
TGGTTAACCAAAAGACCATGATATCCTCAGATACAAGATTTCTACCTGCCTATATTTCATCACT
GTTGAGCCCAAGTCAAGATTTGATGGTCCCTGAAAATCTTCATGAGAGGTTATCCCTGTTCCTT
TCTCTTTCAAATGCTTCATTTTTATTGAACACCTATGTTTGTTCCACTTTAAACTTTGGGTTCT
TGATGAATTGTCTTCTTTAAACCACATCCATGACATTCTTTAACTAGCATTATTCACTTATGCT
CTTAAAATCAATTTGAGCTAACACTCGCTAGCTTACAGTGCAAGGGGGGTTATTTAAAGGTGAA
TGGGCAGGTCATTGCCATGTTAGCTGTTTAAATTAAATGCACACATGATAATATAACTATACAA
GACAGCTGGGGATCTTTTTTTATTGGAAAATAACACATTAGTATTCTGGGTGAACAAAGAAGGC
TCCTCCATACTGGAGTTTGTATATTTAAATAGTAGTGTTCTTGCATGTTCAATTGATTCTTTAA
TTTTGTGAAACCCCGCTATATTAATGTATTTTATACTTCCCTGATCACAACAAATAATGCCCGT
TACATGTTTCTTGGGTTTTGCAACTCCCTACCTTCTTGTGTGTGCACAATCATACTTATCGTGT
ATGCTTAGAGCCTTAGATGCATGTTGTGTGCTAAGAAGAAGCACCCTTCTGCTTAACTAGGCAA
CTTGATTGTTTTTTCAGATTGATGTATAAAGTGTAAAATCTTCTCATATTTTGTGCATATTTTT
CCTACTATTAATTTGATGATTTCTCTAGTTGTTTTTTTTATTATTGTTGTTAATTTGTTGTTAA
TTGGAGCATAAGCTAGTTTTTGTGTCTATTACAGATTTGACCAGTCAACAAAAGATGCTATCCT
TCACTTCATCTTGCGCTCTGGTATGAAGCTCTCTTCTTATGGAAAGGTCAGTTGTTCTGCAATG
TTGAGTTATGTAAATGCAAGTTGATATGCACATACAGGTAGATTCCCAAAGTGATGATATTGGT
TTGGATGGGAGTTAATTTTTTTTTTAAAAAATATATATGTTGCAGTTCATGATTTTGTCAATAC
TGAAAGGAGTAGGAAGCATCTTGTTTGATGTAGAAGATGTGAAGTCTTTATTGTTTGATCTTCT
GGATCGGCGCAATCAGTATCAGAGTGGATGTGAGTCTAGGCAGATCATGTCCACCCATGAAATA
CAAATCTTGTGCTTGCTTTTGGAG
Conservation Information
Conserved circRNAs osa_circ_024764 osa_circ_024761
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021