Detail information of BGIOSGA004895_circ_igg.1


General Information
CircRNA Name BGIOSGA004895_circ_igg.1
ID in PlantcircBase osi_circ_010986
Alias Chr01:39042696_39049283(MH63RS2), Chr01:39042696_39049283(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 41411859-41416123  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA004893_circ_ig.1 BGIOSGA004896_circ_igg.1 BGIOSGA004894_circ_igg.1 BGIOSGA004895_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGCGACACTTTCCTCGTTGGTCGACGAACACGGCCGCGGCGAGGAGGATGACAAGACGAAAGC
GGCGGCGAGAGGGATGCGGAGCCGGCGGGGACGACGgccgtcgggttcctggagcgcatcgggt
tcaacggcgtgcagggcaacctggtgatgtacctgaccgggccgatggccatgtcgacggcggc
ggcggccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGTCGGGTTCCTGGAGCGCATCGGGTTCAACGGCGTGCAGGGCAACCTGGTGATGTACCTGA
CCGGGCCGATGGCCATGTCGACGGCGGCGGCGGCCGCCGGCGCCAACGCCTGGGGCGGGACCGT
GCTGGTGCTGACGCTCGCCGCCGACTCGCGCCTCGGGCGGTACCGCGCCATCGTGGCCGCCGGC
GTGCTCCATCTCCTGGTCAGTTCGATCTTCCGCTTCTCTCGATCTATACCTGTCGAACAACTCT
GTCATCGGATGATCGAGTTCATCGATGTTCCAACAAAGAGTCGCAATTTTACAGAGTTTGGGAA
TGCTGACGATCTCATCAGTGATGCAACCAAATCATCCTCACCCGGCGAGCTGCCATGACGCAGC
CGCCGCCTGCTCGCCGTCGCCGACGCCGCCGCCATCTCTCGCCCGCCTCGTCTTCTTCCACGCC
GCGCTCTACCTGCTAGCGCTGGCGCAGGGCTTCCACAACCCGTGCTCCGAAGCCTTCGGCGCCG
ACCAGTTCGCGGCGAGCGACCCCGGCGCGCGCGCGTCCCGGAGCTCCTACTTCAACTGGTACCA
GTTCTTCAATTCCTTCGGCTATGGCATCTCCAACACCGCGCTCAGCTACGTCGAGGACAGCGTC
AGCTGGACCGTCGGGTTCGCCGTGTGATTGGCCACGACGGCGGTGTACCTCCCCATCTTCTTGC
TCGGCACGCGGGCGTACCGCGCCGAGCAACCCGTCGACGGCGCCCTGCTCGCGCGCCTCGCCAA
GACGTCCTCCTCGGCGGCGCGTGCGTGGACGGCGAGGGTGTTTCGCCGGAAGGATACCTCTTGC
ACAGAACGGTGAGCTCGCCGCGCCAGCGAAAGCAAAACGTGCGTTCTTGATGAGTTGATCTGAT
AACCTTCCTAATGGCGAATGTTTTACACTAATCGTGCAGGCTTCTGGCGAGGGAAGAGGTAGGC
GAGAAGGGGTTCCTTGCCAAGTTGCTTCCGATCTGGGTGACCAGCATAGTGTTCGCCATCGTCA
GCGCGCAAGAGGTCACCCTGTTCATCAAGCAGGGCAGCACAATGGACCGGCGCATCGGCGCGCG
CGGGGGCCTCGTCGTGCCGCCCGCTGCTCTGCAGTCCATTGTCAGCGTCATCTTCCTCACCTTC
GTGCCGGTCTACGACCGCGCCCTCGTGCCGCTCGCGAGGCGCTTCACGGGGCACCCCGCGGGCA
TCACCACGCTCCAGCGCGTCGGCGTCGGCATGGCCATGTCCTGCCTCGCCATGGCCGTGGCGGC
GCTCGTCGAGGCCAAACGGCTCCGCGCCGCGAGCGACGCCGGCCTGATCGACCGGCCGGACGCG
ACGGTGCCGATGGGCGTGTGGTGGCTGGTGCCGCAGTACGCCCTCGTCGGCCTATCGAAGGTGT
TCGGCATCATCGGGCTCGACGAGTTCTTCTACGACCAGGTGCCCGACGACCTGCGCAGCGTCGG
GCTCGCCATGTCCCTGAGCGTGCGCGGCGTCGGGAGCTACGCTAGCGGCGTGCTCGTGTCGGCG
ATCGACTGCGCGACGAGGAGCGGGGGAGAGAGCTGGTTCTCCGACAACCTCAACCGCGCGCACC
TCGACTACTTCTACTGGATCCTCGCCGCGCTCGCCGCTTTGGAGGTCGCCGTGTTCGTCTACAT
CGCGAAGCGATACGTCTACAAGAACAAAGGCGAGCCATGATTCTTCCGAGTTCGGATTAGAGTG
TGTAATAAGTCTGAAAAATGGTCCACATGCTCAAAGATGTGTACTCTTTCCCGTTTCATAATTC
TTACATTTTACATAAGGTTAAGGTTAAACTTTTATAACTTTAATTATCAATAACTTTAAAGTAT
TTAGTTTAAAGAAACTATAACAACGTATATAGAATTATCTTTCAAAGTACTATGAGAAAAGTAA
ACAATATTTATTTATTTATGTATATATTATAATAGAAAAATCAAGTTAAACATGTATTTTGAAT
ACCGTGTCATTGTTTAAATGTTAAGAATTATAGAACGAGAGGGAGTAGTATTTATAGTGAGAGA
ATGCAACATAATCTACCTCTCTAGCAGCAAGATGGAGTACAAGTACTTGGTGGCTGGGGCATGC
TTGGATTGTATCCATCAGATCGAAAAAGGCTGAAATTCCTGTTGTTTGGTGTAAGGGCATGTAA
AAAATTAGAGTCAGATATTAGCTCTATGTTATTTAGAGATTAGCATTCTACAACAATTAGAGAT
AATATGGTCTCTAATAATTAATGTATAAAAATATTTTTTCTTACTCTTCTTTCCTTTCTTTCAC
TACCATGCAACAAAATTTGCTCTAATAAATGCTACGAGTCGACTCTGAGCTGTTATCATGCATA
ACAACCATACTCTTTTCTCTTTCTTCCATGTCATCAAATTTACTTGCATGGCAATAGATAGAGA
CCACTAATAAAGACTGTTGTACATGCCCTAATACACCCAGAAGATTAAAAAGGCCTAGAGGCAT
GCGTGATCTCTCCTTACGAATATGTATAGGAAAGTAGGTTGTATTTTCGGTACACTTAACTTAT
AGGTGTATAAAGGTTTTACAAGAGGAAAAATAAATATAAATTCTCCAAGCAGGCTCTCTTAGGC
TGTGTTCGGGAGGAGGGGTTGGGTTGGGAACCCCTCCTCCCCGGCACGTAAAACGAAGGTCCTA
TTATTGCGTGATTAATTAAGTATTAGTTAATTTTTTTCAGAAATGGATCAATATGATTTTTTTA
AACAACTTTCGTATAGATTTTTTTTTGCAAAAAAAACACCGTTTAGCAGTTTGAAAAGCGTGCG
CATGGAAAACAAGGCGGAGGAGTTGGGAACAGGCAGCAACGAACAGAGCCTTAGAGCAAGCCTA
ATAACATAGTCAGCTACTGGCTCTATACTAATACCATGTCACCTATAGCCATCAGGCCCATCAC
TAATATAATAGGCTGGCTGTTAGGTTGGCTGTTTGTTTAACTCTATTGAAGATTTAGATATTTA
ATATTAGCATGTGCACCTGATCTCCTCGCATCTGATTGGAAGAAAGCAATATTTCCTCGTGTGT
TGTGCTTCAGCCGGGCGATAGATGGAGCGCCCGCTCCATCCTTTTTCTTCTCTTCTCACTCCTC
CACGTTGGATTTTGCTGACGGGTAACGTGCTAGCGCCGGCTGATTAGGATGTATTAAACCTGCT
CTTAGGAGTACTACTCTCTAGTCAAATTGCTTTGACGTTGGAAAAGTGGACATCATTTTTTTTT
TGCTAGAGGGAGTAATTCTGTGACAACACACAGTATCATTAGGTTTAGGTTTCAATTTATTTTT
GATATAATCATGATTTTGTGGAAAAATCAATCGGCAAAGTTTGATTGTAAGTACCACCTTCTTC
GGTATTTACAACGGTGGGTAGAAATCCCATCGCCCGAACGCGTGTACACAGTTGCACACGATTT
TTGGTGCACTTTCTTTTTTAATAACATTAATTAATGACGGAAACAATTATGCTCGGGCGCTCTG
TACCTAACAAAATATCGGGCGTCTTATCAGTCAACCATTCCACATTCCTCCGTGGCGGTGGTCG
GGCCATGGTTTGTTGTGACCGGCGAGGGTTCATGCAGCTGCGGTGGCTTGCTAGCACATCGGCG
TAGCTCGAGGCCATGAGATGGGAGGAAGACAGCAACCCGTGCACAAATTTTGATAATTTGACCC
TTTACAGAAACTCAGCCTGTTCATCTACGGTTAAGACGGGTTTCCGCCATAACCCAGCCCAACC
CGGAGCTGGCTGGTATTAGACGGTTTGGTCTAGCGGTTTGAACGGGTTAAACCGTTTGTCGTCT
TCTTCTTATGAGAACGAACAGAGAGCAGGACGACAGCCATGGCAGCTGTCCTTTGCAAGCAGAT
AAAAATTCCTGCAGATGATGCGCAAGCACTTCTGTAGATGAACGAACAGGCTGACCTGGCTTCG
TGCGGCGCTTTCCTCGTTGGTCGATGAGCACGGCCGGGGCGAGGAGGATGACGAGACGAAAGCG
GCGGTGAGAGGGATGCGGAGCCGGCGGGGACGACGTGCGGCGCTTTCCTCGTTGGTCGACGAAT
ACGGCCGGGGCGAGGAGGATGACGAGACGAAAGCGGCGGTGAGAGGGATGCGGAGCCGGCGGGG
ACGACGCGCGACACTTTCCTCGTTGGTCGACGAACACGGCCGCGGCGAGGAGGATGACAAGACG
AAAGCGGCGGCGAGAGGGATGCGGAGCCGGCGGGGACGACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021