Detail information of BGIOSGA014757_circ_g.2


General Information
CircRNA Name BGIOSGA014757_circ_g.2
ID in PlantcircBase osi_circ_014549
Alias Chr04:25889723_25892183(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23984156-23986616  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA014757-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTAGCTGTTCCAAGATACAAGGGTTGAGGCCTCCCTTCCAATGAGACACTGACATTACGGAA
AACAGTCTTCTCTTCAAGCCCATATATTTCCCTTACcctttgctgccggtatgcatgtaaattc
aggaatcgagcaagttatgctacccataagcctgcaagcctctgaaacagttcaagagttcaaa
ttataaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGCTGCCGGTATGCATGTAAATTCAGGAATCGAGCAAGTTATGCTACCCATAAGCCTGCA
AGCCTCTGAAACAGTTCAAGAGTTCAAATTATAACAGCTGTTATGATATAACAGGGCGCAACAA
AACTCAATTTTCGGGGAAAATAGAACAAAAGCCAAAAAAGGAATATGGACCGAGAAAAAATGAA
ATTAATCCAGCGTAGAATCAAAGATCTCCCTCGGATTCCAAATATAAGTTTTTCTTACCAAAAT
CCAAAATATATTGGTTTCAGATTTTGGCACGAGAATTAAAGAAATAGCTCAAACAACTCTATCA
GTCTATGCCCATCATTTATACAATATTGGAAAAGGATGAGTCATTTCTTTGTAAGAGGGCAAGT
GCAAACATGGTAAAAGAGATGGCGAGGCGCCATTCCAAAACGACTTACATTTAGGAAAGAGTTG
AGAAAACTAAAACCACTATCATTTGGAATCAGAGGGGGTATAGAGCATCACTAAGAATACACAG
GATAAGCTGAAAGATGATAGTTGCTCAAAAAAGGATATAATCATTTCAACCTTGCAGAGCATAT
CAGAAAGGAGACTAAAGTTGTGATATCTAAAAATATCACAACTATGGCCCCGTTTGGTAGAGCT
CCTAACTCCAACTCCCAACTCCCAACTCCAAACTCCAACTCCAGTGAGAGCTAGCTCCTCTAGG
AGCTGAGGTAGGTAAAAAAGTGTTTGGCTAGATTACTCAGCTCCACATTTCTACATCCTTTGTC
GCCATTTCATCGAACACCTTCTAGGCGTCGCCTTGACGTTGCCGCCGCAGCCGGTCAGCCCACG
AGCCACCGCCGCCGGGAAGCCCACGCATCTCCGCCGCCTCCCAAGCCGCTGAGCAAGCGCCGCC
GCACAGGCCGCCGCCGTCGCCCAGGCTGCCTCCTGCCGACACCCCCGCACGCGAGTCGCCTGCC
GACGCCGCCGCCGCGTGCCGCCCGTCGCGGCCACCGCAACACCGCCCGCAGCCGCCGCCATCGC
CTGCCGCCGCCGATGCGCCGCGGCCTGCTGCCCCCGTATGCTGCCAACGCAGACGCCGCACAAC
CGGTTGTGGCGTCGTCGGAGGATGGGGAAGAAGATGGGCCGCGCCACCTGCTGGCCCCGCCGCC
GCGCCGCTCGTCCTCGTCCCCCAACAGCCGCTCTCCGCCGCTGCCGCAGCCCCCCGCCGCCAGC
CTCCGGCCGCGCGTGCGCGCCGCGCGCGCCGCCCGTCGTCGTCCCGCAGCCGCCGCCGCCCGCC
GCTGTCGCTGCCCGTCGCCGTCGACGCTGCCGCAGCCCGCCGATGCCGCCGCACTAGCTCGGGA
TTGGGAGGAAGATTGGGGGAGGAGAGAGAACGGGAGGAAAGAAGGGGTGAAAGGGTAGTTGAGT
GGCATTTTCATGTAAATACACTAAAATATTAGAGGGTAGTGGGTCTTTAGGGGTGGAGTGGAGC
TGTGGAGCAGCAAAAACCCAGCTCCAGCCCCGTAGTTCATTTTCTAGGAGTAGCTCTGCCAACT
CCACTCCAAAAACAGGTGAATCTGGACCGTTTGGGCACAGCTCCCGCTCCAGGTAAGTTGGAAG
TTGGGAACTAGAGTTGTGCCAAACGGGGCCTATGTTCCACCTAAGGGATGGTTTGTTAATGCAA
TTATGACCTATGAGGCTTTTTTTTTCCTCGAAGAGACCTATGAGGCTATGACAGTATCTGCAGT
TCTCCACAATGATGGAAATACATTTTTAGTCATAGCAATTAAACCATCATGATGTAGTGATGTG
ATCGGAAAAGGAAAGCATGCAAAGTTCCAAGGATTGAAATTCAGATGAAATGAGGCATTCCATT
TTTGTCCATTTCCAAAGTTAATATTAATCATAACTGTATGCGCTTAATTAAAAATCAAATAGAT
ACTATCTTACACGCAGTGAACTCAAGTTCCAACTCAGCAAATTACAAACACTGAATCTCACAGT
GAAAAAATATACCTTGAACTGATGATGCAACATCAAAAGATGGAGGGTTAAGAAGAAGATCTCT
AATATACCTACATATCATAAGAAAAGGTAACTCTCAAGAGCCAAGGCAAACACATATAAGCAAT
GGAATATAAAGATCTTGCTACGATTTTTATGGAAGGCCACCAAATAGGGGCACTTAATCCAACA
AATAACAAATACTTACAATGATGGAAGGCCACCAAAGTTTGGAGGGAGAACAATTTTTAGCAAA
CTGGGTATTCCCTCAGTTGGTATCACCCCTATAGCACATTAATTAATAAATGAGATGTCACCAC
TTTAGAAGTCTCTTTTAAAAGATCAACACTACCAAGGAAGCTAACTCATACCAATTTGAGTAGC
TGTTCCAAGATACAAGGGTTGAGGCCTCCCTTCCAATGAGACACTGACATTACGGAAAACAGTC
TTCTCTTCAAGCCCATATATTTCCCTTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021