Plant Circular RNA Database

Detail information of EPlOSAG00000012103_circ_ig.2

			
						 General Information
					
						CircRNA Name
						EPlOSAG00000012103_circ_ig.2
					
						ID in PlantcircBase
						osa_circ_014111
					
						Alias
						Os02circ09513
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 8527959-8531016  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						KNIFE, SMALT, Segemehl
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							EPlOSAG00000012107_circ_ig.1 EPlOSAG00000012107_circ_ig.2 EPlOSAG00000012104_circ_ig.1 EPlOSAG00000012098_circ_ig.1 EPlOSAG00000012098_circ_ig.2 EPlOSAG00000012098_circ_ig.3 EPlOSAG00000012103_circ_ig.1 EPlOSAG00000012103_circ_ig.3 EPlOSAG00000012105_circ_ig.1 						
					
						Support reads
						5/5
					
						Tissues
						leaf and panicle/leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	EPlOSAG00000012103_circ_ig.2
ID in PlantcircBase	osa_circ_014111
Alias	Os02circ09513
Organism	Oryza sativa
Position	chr2: 8527959-8531016 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	KNIFE, SMALT, Segemehl
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	EPlOSAG00000012107_circ_ig.1 EPlOSAG00000012107_circ_ig.2 EPlOSAG00000012104_circ_ig.1 EPlOSAG00000012098_circ_ig.1 EPlOSAG00000012098_circ_ig.2 EPlOSAG00000012098_circ_ig.3 EPlOSAG00000012103_circ_ig.1 EPlOSAG00000012103_circ_ig.3 EPlOSAG00000012105_circ_ig.1
Support reads	5/5
Tissues	leaf and panicle/leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGCCACAGATCCAGCTATCACTATGTCCACAAACATGTGCGAATCCCCAGTTGTTTACTGCACA
AATTCACCCCAACAAAACCATGTTTAACCTTGTCAGgtgagataagaccacagagccagtcatc
gctatgtctgaaagcatatagactatttcccagctgtttacaccccggcaaaacaatgttcaat
cttataag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGAGATAAGACCACAGAGCCAGTCATCGCTATGTCTGAAAGCATATAGACTATTTCCCAGCTG
TTTACACCCCGGCAAAACAATGTTCAATCTTATAAGGTAACTGCACACTTGACCATCTTCTCCA
TGCAAATTTTAAGATCAAGTAAAAGTATAATGTGGATTATCACAATTCTTTATTAGCAAGAAAA
CAAAAACAAGTCTTCTTTAACTCTTGTCATTGTTTAGTTATCTTTTGACAATTTAGTGCTCTGA
TATTTACTCAAACCTTCTGGACCTTGTTATTGAACTATGCTCAATGATAAAATACTCCCAAGTC
CATCCTGAAATTCAGAATCTGCTTTCATATAAAAAAAGAAGCTCACAGCCTCCTCCTGCCTTTA
AACAGTAAACGATGAAAAAAGCAGAAGGATCAAAACTCACAACCACTGCTGTTTATCTTGTATT
TTGAGAAAAAAGAGCAATAACACTACTACTGACAGGTCAATCTGTCAGCTGCTCGGTACTCTTA
TAACATCCACAGTAGCAGACTAGAAGTACTCTTATATTATATTTATAACAGCTCATGTTTGATA
TATTGATCCTGCAAGTATTTGACTATCTCGATCCCATTTGAGGAGTACGGGAATACCTAAAAAA
AAACAAAGAAGGTTCCACCGGGATTTGAACCCAGGTTGCCAGATTCAAAGTCTGGAGTGCTAAC
CACTACACTATGGAACCGGATGTTGTATGTGGTCCCTTGCAGATGATATTTCTGTCTTATATTC
CATAAACACAGTGAAAAGCTGGAAATTTTGTCCATGTCCTTTTGAACTCTTTTTGTTTGTTTCC
ATCAGTTTAGTTTCAGTGAAACTGTTTCCTTTGAGCATGCATCCAATTAGCATACATGTAACAT
TTGGTAAAAGGTAAATATTTGTTTGGATCATTTGCTACAACATTTTAGCACTCCGTATAATTAT
TAAAAGTAATTTTTGACTGTGTATGCTCAGAGAGAGAGAGAGAGAGAGAGTCATCTAATAGAAT
TTGCAAAATTAAATATTCCAAAGTTTGATTGCGCTGATGTATGTTTGTGAGCAGAGGGATTATG
TCATAGTGGGATGCAGTGCATAGTAATCTAATGGTATGTTGAAATAATCTAATGAGGTGAACAC
ATGCACAGAAAATACTGTGGGCATGTCATGTTTAACCTTCTTAGGTAGCTACTTGACAAGCTTC
TCCATGCAAATTATAAGATTTGAGTGAAAAATATAATGTGGCTTATAACTGTTTGTTAGCAAGA
AAAGAAAAAGAAACATGCGTTGTCTAACTCTTTCCATTAGCTATCTTTTGACAATTTAGTGCTC
GTTCACTGATAAAATACTCCCAACTTTATCCTGAAGTTTTGTTGTCTTCTCATTGTATTGGAAG
CTCCAGCCTATTTTCGTCATTTATGTTTTATCTGTTCAACAGACTGTTAGACTGCTTTTTAATG
TATTCCATGGGATATTTTATCAAATACAACGCGTTAGTGTTTGCCATGTTTTTCTGCTTCATAG
TATTACTAGCCAAGAGCCCACGTGTTGCAATGGAAAATAAAAGGTTTCTAGCTTATTAAGTCAA
TTAAGCACATATTTAGTCCAAGTACCGCTTTTATGATTTTCCTTATTGAACAAATAGGTGATTT
CAAAATTTAATGTCAGTGCTAGGGGTGGTGTGACAGAACAACCACCACCACTACTAACATTTTA
CGTAGCATAGATAATTCATTGGTTAATTTCTTTTGTTCTCTCTTATCCTTTTTTTCCCTCCATC
TGCAATCATCAGTGTGAAAGCCTACATTCACACCAGAAATATCGTTACCATCTAGCTTGAAACC
ACAAGTGTCTTGTCTGGAATATAAAGAGTGCTATGTATATGATTTTTGATTTTTTTTTATGTTG
GTGATGGTAATAGTGTTGATGGATGGTTTGTCACTAAAGATTGCTGTTTGGAGATGTTGAGATA
GTGAGAAGATTAAATGATCAATAGGCTCAGATGCCCCTAAAGCAGGGAGATATGCCACATGTTG
ATGCACAGTATTAAACAAGAACATGGTGAACAAAACTATTATATTTATAGCAACTCATGAATCG
TGTATTGGCCCTGCAAGCAATTGGCTATGTAGACCCCATTTGAGGACTATGGCAATACCAAAAA
AGAGGTTCCACCGGGATTTGAACCCAGGTTGCCAGATTCAAAGTCTGGAGTGCTAACCACTACA
CTATGGAACCAGATGTTGTATTTGGTCCCTTTCTGATGACATTTCTATCTTATATTCCAAAAAA
GGTAAAGGCAGGAAATTTGTCTATGTCCTTTTTTATCTTTTCTTTTTTTGTTTGTTTCCATCAG
TTTGGTGTCAGTGAAATTGTTCTCCTCTTTGAGAACCATTCATCCATTTGGCATACACGTAGAC
TGACATTTCTTAAGAAGTTCTATTCATTTAAATCTTTTTGTAGAACTTTTTGGCACTTCGTAGA
ATTACTAAATGCGACTTCTGATGGTACATGCACTCCAACAGATAATATTCACCCCTGATTTCTG
TAATAATCATCTTACAGATGCTTCAAAGTTAAATCTTCGGAGAAGTTTCATTGCACTAATTAAC
AGAGTGATTATATCATATGTGAATGCAACGAATAGTCAAATCTAATGCTATGAATTAAACTTTG
GATTTAATCTTAGGTTTAAGTAATTGTGAACTTGGCGCAGCCTAATTAGAGAACACATGCTCAC
AAAATACTGTGGGCATGCCCTATGCAGTGGCTACTTTAAAATTCGATGGATATTTTATTTTATA
TATACAACTCAAGGGTTGTACCTAGCAATATAGATTACTTCTAATTATAACGTGATATACTATT
ATCTTGGAAATTTAACTGATGTCTCACAGAATGCTCTGTGACAAATTGTGTTTTTTCTTCTGGT
TGTAGGTGAGATAAGGCCACAGATCCAGCTATCACTATGTCCACAAACATGTGCGAATCCCCAG
TTGTTTACTGCACAAATTCACCCCAACAAAACCATGTTTAACCTTGTCAG
						
					

			
		

Sequences
Splice junction sequence	GGCCACAGATCCAGCTATCACTATGTCCACAAACATGTGCGAATCCCCAGTTGTTTACTGCACA AATTCACCCCAACAAAACCATGTTTAACCTTGTCAGgtgagataagaccacagagccagtcatc gctatgtctgaaagcatatagactatttcccagctgtttacaccccggcaaaacaatgttcaat cttataag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGAGATAAGACCACAGAGCCAGTCATCGCTATGTCTGAAAGCATATAGACTATTTCCCAGCTG TTTACACCCCGGCAAAACAATGTTCAATCTTATAAGGTAACTGCACACTTGACCATCTTCTCCA TGCAAATTTTAAGATCAAGTAAAAGTATAATGTGGATTATCACAATTCTTTATTAGCAAGAAAA CAAAAACAAGTCTTCTTTAACTCTTGTCATTGTTTAGTTATCTTTTGACAATTTAGTGCTCTGA TATTTACTCAAACCTTCTGGACCTTGTTATTGAACTATGCTCAATGATAAAATACTCCCAAGTC CATCCTGAAATTCAGAATCTGCTTTCATATAAAAAAAGAAGCTCACAGCCTCCTCCTGCCTTTA AACAGTAAACGATGAAAAAAGCAGAAGGATCAAAACTCACAACCACTGCTGTTTATCTTGTATT TTGAGAAAAAAGAGCAATAACACTACTACTGACAGGTCAATCTGTCAGCTGCTCGGTACTCTTA TAACATCCACAGTAGCAGACTAGAAGTACTCTTATATTATATTTATAACAGCTCATGTTTGATA TATTGATCCTGCAAGTATTTGACTATCTCGATCCCATTTGAGGAGTACGGGAATACCTAAAAAA AAACAAAGAAGGTTCCACCGGGATTTGAACCCAGGTTGCCAGATTCAAAGTCTGGAGTGCTAAC CACTACACTATGGAACCGGATGTTGTATGTGGTCCCTTGCAGATGATATTTCTGTCTTATATTC CATAAACACAGTGAAAAGCTGGAAATTTTGTCCATGTCCTTTTGAACTCTTTTTGTTTGTTTCC ATCAGTTTAGTTTCAGTGAAACTGTTTCCTTTGAGCATGCATCCAATTAGCATACATGTAACAT TTGGTAAAAGGTAAATATTTGTTTGGATCATTTGCTACAACATTTTAGCACTCCGTATAATTAT TAAAAGTAATTTTTGACTGTGTATGCTCAGAGAGAGAGAGAGAGAGAGAGTCATCTAATAGAAT TTGCAAAATTAAATATTCCAAAGTTTGATTGCGCTGATGTATGTTTGTGAGCAGAGGGATTATG TCATAGTGGGATGCAGTGCATAGTAATCTAATGGTATGTTGAAATAATCTAATGAGGTGAACAC ATGCACAGAAAATACTGTGGGCATGTCATGTTTAACCTTCTTAGGTAGCTACTTGACAAGCTTC TCCATGCAAATTATAAGATTTGAGTGAAAAATATAATGTGGCTTATAACTGTTTGTTAGCAAGA AAAGAAAAAGAAACATGCGTTGTCTAACTCTTTCCATTAGCTATCTTTTGACAATTTAGTGCTC GTTCACTGATAAAATACTCCCAACTTTATCCTGAAGTTTTGTTGTCTTCTCATTGTATTGGAAG CTCCAGCCTATTTTCGTCATTTATGTTTTATCTGTTCAACAGACTGTTAGACTGCTTTTTAATG TATTCCATGGGATATTTTATCAAATACAACGCGTTAGTGTTTGCCATGTTTTTCTGCTTCATAG TATTACTAGCCAAGAGCCCACGTGTTGCAATGGAAAATAAAAGGTTTCTAGCTTATTAAGTCAA TTAAGCACATATTTAGTCCAAGTACCGCTTTTATGATTTTCCTTATTGAACAAATAGGTGATTT CAAAATTTAATGTCAGTGCTAGGGGTGGTGTGACAGAACAACCACCACCACTACTAACATTTTA CGTAGCATAGATAATTCATTGGTTAATTTCTTTTGTTCTCTCTTATCCTTTTTTTCCCTCCATC TGCAATCATCAGTGTGAAAGCCTACATTCACACCAGAAATATCGTTACCATCTAGCTTGAAACC ACAAGTGTCTTGTCTGGAATATAAAGAGTGCTATGTATATGATTTTTGATTTTTTTTTATGTTG GTGATGGTAATAGTGTTGATGGATGGTTTGTCACTAAAGATTGCTGTTTGGAGATGTTGAGATA GTGAGAAGATTAAATGATCAATAGGCTCAGATGCCCCTAAAGCAGGGAGATATGCCACATGTTG ATGCACAGTATTAAACAAGAACATGGTGAACAAAACTATTATATTTATAGCAACTCATGAATCG TGTATTGGCCCTGCAAGCAATTGGCTATGTAGACCCCATTTGAGGACTATGGCAATACCAAAAA AGAGGTTCCACCGGGATTTGAACCCAGGTTGCCAGATTCAAAGTCTGGAGTGCTAACCACTACA CTATGGAACCAGATGTTGTATTTGGTCCCTTTCTGATGACATTTCTATCTTATATTCCAAAAAA GGTAAAGGCAGGAAATTTGTCTATGTCCTTTTTTATCTTTTCTTTTTTTGTTTGTTTCCATCAG TTTGGTGTCAGTGAAATTGTTCTCCTCTTTGAGAACCATTCATCCATTTGGCATACACGTAGAC TGACATTTCTTAAGAAGTTCTATTCATTTAAATCTTTTTGTAGAACTTTTTGGCACTTCGTAGA ATTACTAAATGCGACTTCTGATGGTACATGCACTCCAACAGATAATATTCACCCCTGATTTCTG TAATAATCATCTTACAGATGCTTCAAAGTTAAATCTTCGGAGAAGTTTCATTGCACTAATTAAC AGAGTGATTATATCATATGTGAATGCAACGAATAGTCAAATCTAATGCTATGAATTAAACTTTG GATTTAATCTTAGGTTTAAGTAATTGTGAACTTGGCGCAGCCTAATTAGAGAACACATGCTCAC AAAATACTGTGGGCATGCCCTATGCAGTGGCTACTTTAAAATTCGATGGATATTTTATTTTATA TATACAACTCAAGGGTTGTACCTAGCAATATAGATTACTTCTAATTATAACGTGATATACTATT ATCTTGGAAATTTAACTGATGTCTCACAGAATGCTCTGTGACAAATTGTGTTTTTTCTTCTGGT TGTAGGTGAGATAAGGCCACAGATCCAGCTATCACTATGTCCACAAACATGTGCGAATCCCCAG TTGTTTACTGCACAAATTCACCCCAACAAAACCATGTTTAACCTTGTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.53604913

Conservation Information
Conserved circRNAs	NA
PMCS	0.53604913

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of EPlOSAG00000012103_circ_ig.2

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