Detail information of AT1G18470_circ_g.4


General Information
CircRNA Name AT1G18470_circ_g.4
ID in PlantcircBase ath_circ_003290
Alias 1:6358232-6359243
Organism Arabidpsis thaliana
Position chr1: 6358232-6359243  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G18470
Parent gene annotation At1g18470
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G18470.1:4
AT1G18470.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACAGGATATTTACCATAAGAACTCTCGAGGTATATACAGAGGAGTAATTCAAATGCTACAAG
TAACGGTGTCGCGACAACAGCATGGCAAGGAGCCCAcagaaagctttaggagggtaaagaacgt
agcagccaacgtgaacaccatggaaattgcaacccagaaatgctgcaggcaacaaggaaaaagc
atctaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAAAGCTTTAGGAGGGTAAAGAACGTAGCAGCCAACGTGAACACCATGGAAATTGCAACCCA
GAAATGCTGCAGGCAACAAGGAAAAAGCATCTAAATGGTTATTTTTGAGTACTGACCAGCTTCC
CCACCCATCAACAAAAGATTAGAAAATCCCAAGCCTGTGTTTGTGGAAACTAAAGTATTAGAGA
CATTGGTCAAAGTTTTCTCCCTTCTCAGTCCTGAGTTGTGTAATTGGAAAATTAGAGACAGATT
TTCATTCATGTTTAACAGATTGATCTTGCCTAAATACTTTTAAAAAATTGCAAAATCAAAGAGC
AACAAGCCTAAAGCAGCTGAACCAAGCCTCAAGCTCAAGCCTTCAAATATTTTATGCAACAATA
GTGGACTTACAGGAAGTGCCTCCCATATTGCATCATCAGTTATGCTGTCGTCGTCTCCTGGCAT
CAATGCTCGACACATTCTGAAGATAAAGCTTGCAGTCATTAGGATCTTTAGATTTATATGATTT
ACATTTGGTGTGTGTTCACGAGACACATAGATCAATACCTCAAATTGTCTACCAGTATTGTTAA
TTCAAAAGCCAACAATGGTAAGAAAGCAATCTTCAAACTGACAGCTGGTGGCCAACGAGCTGCA
TTTAAGATAGAACAGTCCACAATCAGATGAAATGGGAGAAAGTGCAAAAAGAAAAACCTTCATA
CAGAATCAAGAAAATTGTAACACAAGAACTACTTTTAGATGTCCTCCAACTTAACCATCCGTAT
TATCCGAAATACAAACAGTAGCAAGAAGAAACTTTGAGAATCATAGCCAATGTTTATATTTAGT
ATTGAAGAAATCAGTGTGTTCGCATGCCAAATAGTAAAAAACTATCACCCAAAAAACCTATGAA
GTGCAAAATCTGTAGGTTACAGGATATTTACCATAAGAACTCTCGAGGTATATACAGAGGAGTA
ATTCAAATGCTACAAGTAACGGTGTCGCGACAACAGCATGGCAAGGAGCCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.127769573
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020