Detail information of TRIAE_CS42_5AL_TGACv1_377478_AA1247110_circ_ag.1


General Information
CircRNA Name TRIAE_CS42_5AL_TGACv1_377478_AA1247110_circ_ag.1
ID in PlantcircBase tae_circ_000112
Alias circRNA377
Organism Triticum aestivum
Position chrTGACv1_scaffold_377478_5AL: 16281-21037  JBrowse»
Reference genome TGACv1.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAACACCAGCCCAGCCGGGCCCTGGAGTGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGG
GGTCGTCTTGGATCCAGAGCCTGCCGGTGTCTGCACcctcgggcgtggtcggcgtggcggcgcc
aggagcagtgccaccgccgttgcacctgctcgcgggcggggtctgcacgttgcacgccttgggg
agctcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGGGCGTGGTCGGCGTGGCGGCGCCAGGAGCAGTGCCACCGCCGTTGCACCTGCTCGCGGG
CGGGGTCTGCACGTTGCACGCCTTGGGGAGCTCGAGCGCGCGCGTCTTGTTGATGGTCATGCCG
CCCAGCGAGGACGAGTCCCCACCGAGCGCGCTGCAGAGGCACTGCGGCTGGGACTGCACCACGG
AGCCGAGCTGCGAGCAGCAGGACTTGGTGGGCGCCGTGTCGTTGCCGCTGATGTAGTTCAAGCA
CGGGTACAGGCCGACCAGCGCCGCCGTGCACCCGGACTGCGCCGATGCCGACGCCACCAGCAGG
GCCGCTGCCAACGCCGCGGCCAGGAGGATGCTGCCGCCGGACATGGCTCTCGCTGCCATTGACG
GATTTTCTGCCCCTTGGGTTTTGCTAGTGAAAGCAAGAGGCTTTTCTTGGGCTCGATGCTTCTT
GCTTGTGCTGATCAGGCTTGTGTGTTCGTGCTTTTGGCGCTCAAATTTGTGTGATTTTATTGGA
GCTGTTTTGTTGGGGAAGGTGGAATTAGTTGGGTGTGTTGGTGAGCTGCATGTCCCTACTTCCT
ACTCGTGGCACGAAATGATTTCTTTCTCTGAATTGCTGCAGCTGTCGTATGCTGATGCTTCAGA
AAAAATATTGCACATGTGGCTGCTACAATAGTTTATAGTTTGTGTTCATAGTTGAACCACTGTC
GTCCGCGTTGCCGTGTTGGATGAAGCCAACAACGGTATTAAGTGTCAACGGTATAAGCCAACAA
CGGTAGTAAACTATAGTACTCTCTTCATTTTTATTTACTCTGCATATTAGTTTGACCTAAGTCA
AATTTTTCTAAAGTTTGATCAAAATTATAAAAACAATTAATTCTAAGATTTCACTATATATATA
TAATATTGTATGAAAATATATTGAGTGATGATTCTAATGGTATTGAATTATTATTGTGGGTTAA
TTTTTTTTGTGCAAACTTGGTCAAAATTTAGAAAGTTTGACCTGAAACAAAGCTAATATGCAAA
GTAAATAAAAACACAAGGAGTATGCTACAGTCAATGAAGAAAAACTTCAGCATGCCCAAGGCCA
AGGCCTGGCCTGCCTGGGACCTGGCGCCGCCGCTGCATGGGGGTGACTTGGATGCTTGGATGGT
TGGCTTTTTGGCGAGGGCAGCAGTGATCCTCATGTTGTCGTGGCTTCAACGGTGACGACTCCTT
GGTCTAGATCTGGAGGCCTCGAGCTGGTGGCGACGGTCCTTGCATCGAGTTGGGTCGGTGACCT
TGGTACTTCGTGTGGCACCGATGAGGACCTGAGCGAAAGCTCGTGCTCCAGCGCCGGTGACTCA
TGAGGGGTGTTGTTGTGGGTCCCCTCCCCATACCAGAGCTTCGGTTGAAAATGCTAGTCTGTCT
TTTCGGGCTCAGTGACAGCGGCACAATTCATCGATACAGCTTAGGTACCTTTTGGTTCCAGCGC
ATCAGTGTCTTCGGGCATGCTTTATTCCTTGAGAGAAGACAAAAAGAAAGTGGTTTGGGATGGG
CCGAAGTTGAAGTGGCGGACATGTTCAGACTAACCTATTACTTTCCAACATATGAAGTGGGTTT
GGGATGTTTGAACTGTCTTGATATATGGGCTAGGTTTGCGGAGGTCCATTGGAGTGGCGTTTTT
GTGTCCAAACATACGAAGATTTATGGATTGCTTTGAAGATGCTCTTAGGGATTTACTTAGGGGG
GGGGGAGCTTACCATACCTCTATGTAGGGAACATGCCCGGATCAACGCTGTTGTCTACCTGATT
GTCGGTGAGCTCCCACCTTTGAAACGGTGACCTTCTCTGAAAAAGATGACCTAGTGAATAAATT
GGGCCAGCAGGCTGTTCTCTAGCCATTTGGGCCTTAGTCCTTAGTAGCGCTCATTCTAGCGTGC
CACAAGCCCAAATGTCTTTTTAGATGAGCTCCAACAAATTCAGAAAAAAATGTTGCTTGACTTT
TTTTAACACAGTACAGACGCAAGCGCTCATATAAACGTGCATACACTCACCCCTATGAACGCCG
CACACACACACATTCTACCCTTATTAGCACCTCCGAGAGACTAAACCGGCATATCATCTTGAGA
TTTTATGAAATCACCTAGGCACCTCGTAGTCGACGGGGACGTCTCCTCGCACTGAACGCGCATC
GCCGAAAATCCTGAAATAAATCCAGGATAAATGCGAGCATCAGGACTTGAACACTGGTGGGCTG
GGGATACCACTGTCCTCCTAACCATCCAACCACAAGTCAGTTCGCAAAATGTTGCATGACTGGC
TCATGTAATTTACACAGTTCTTCATTGCCTCCAACCTGTTTATATTTCAACCTAAATGAATGTA
ATTTACTAATTTATTTTTAGTTAGAGATTCACTAGGGGGTGTGCATATGGGTGTCTGGTTGAAT
ATGTTATGAAGAAAGATAGATTTTTGTGGCATATGATACATATTTTATTTGTCAAACTAAGGAT
CTAGAAATATAAATATGTGAGACCTTATACAATTGCATGGAGAGAGGTTTTCATTTTGCGAGGA
CATTGAGAGAGTATTTATTAGTGTATCTCATGTGTTTTGCACATTGATGATGTTTGAATTATAG
CTGCTTTTAGAAAAAGAGTGATCATACCATCGGCCTCGACATCGATTGATGCACACAATTATCA
GTTAATTATTGCAGCGTTTACAAGAGTCAATATGTCATAAAGCGATAGAAAAAAAGACCACCAT
GGTCAACCGAAGAGAATGACAACCGACAAGAAACAAGATAAAAATGCTGCCCCATACGTCACAA
AACCAAAACAAATTTTACATGGATAAGGTTCTAAATGACCCAATATTGTTTCTTATATTTACAT
GGCATTTATATGTGATACTCGTGGTTATTGGTAGACCAAGCACTAAAATGAAGCACTTGAGCTT
TTGTTGGGCCTAGGCTTCAACAAATTGCTAGATCGGCCACTGTCCTTACCTAGGGAAGGGAATA
CACCTATCCTTACTAAAAAAGAAACCTATCCTTACTCTAAAGTTACTGGATTTGGTACAAGAAA
CTATTGTATGGAGTACTAATAAGGAGGGCTACCATGAAGAATTAAATAAATATCTTTACGGACA
ATTTCATTAATGCGGATGAGAAAACATATATAGAGAAAATCGAGACTAAGATGGAGAATAGTTC
ATAACTAGAAAAATTCTTCAAGCGGATATCTAGGGATATAAGTATCAAAAAGTGATAGAAACAC
TACTTATTTACATGCTAAGGCTAGCAAGAGGCATACAAAACATATACCCCTTCGCTCCTGCCCT
CGTGTGAACTCTCATCTAGGATTTCCCTGCCTCTAACCGGCACAGCTACCGGTCTGCCTCGTCT
TCTATATATGGTCCTTGGACCATGGAAGCATGGTGGATCTCAGCCTTTGCCGCGCGGGAGAGCT
CCGTTTTTAGGTGTTTTTCTAAGTTTTGTTATGGTTTGTGTCATGCTTAAGAAGACGAGACGGT
GGTGGCTTATTGAAGATGTAATTAGGTTCACCCCACCTAGTCCCCGTCCCGGTGATGCTTCAAG
CATTGGCAGAGGGCGTGTGGTGGTGTGTCTCCATCGGATCTCATGGGATCCGGTCAGTGTTTGT
CTTCGGTGGATCCGCCTGGATCTGATCTTCGTTCGTCTACGTCTCTGTGTCTGCAGGTTGGATC
CTTCCGATCTATACTTCTCTTCATTGACGGTGGTTGTTGTTCTGTTGGACTGGTCCTATGGGGC
CTTAGCACGATGACTTTTTGACTATCTACTACAATAATGTTTGCCCGGCTCCGACGCGGGAGGG
GGCGATGATGGCGGCGGGCCTTCAGCTCGCTCCAGTGCTTTTAGTCGTCACTAGGTGGTCCACG
GACCTAGATGTAAATTTTACTTATAGTGTTCTTTGTACTACCTTGATAGTTGATGAATAGATCG
GAAGTTTTCTCGTAAAGAAAAAGAGGCATAGAAAAAATGTGTCTCTCCAAGGCTCCGACGGTCC
ACTTTTTACTACCAATGTGTTCATATGGGTTGCCTCTATTTTTTTATAAATATCCTTTGGGTTT
CAAATGAAGCCTAATACTCATGAAGTGCACAAAACTGATTCTAGTGGTCTGATCCTTAACGGAC
TATGAAAAGGCTTAAGACATAGTATGAAAATGTTGCTTCCCATTGATCTAAAACTTATTTCTGA
ATATTTCAGACAACTTTTGTGTTAGAATTAAACAAGGTGACAATGTTCCCTGTCTTGTTTAATT
TAGTAGATAGTGTGTTTGCTAAAATATAGGAAAAATGCTGCAATCACAATATCATTAGAGGCAT
TCTATCTACCACATATAATCCTATAGGTTTTGTCATCACTCTCATTTTTTCTTGAAAAAAAATC
GATGTTTACCGTTGTTGATCATATTCTAAGACTCAAAGAAAACAAACAATAATAATATGGGTTG
CATATGTGGAACAGAACACCCTACAATATAATCCTCTCGGTCCTCACCAACCACCAATGCCCAA
TGCTAAACCAAATAATACCGAGAACTAAAGAAATACATTTTTGAACTACCATCCAGCTAGCGCC
CCAGACGCTCACAGAGAGGACACGGCGTAGACCGCAGCAGCCGCGAGGGCGAACACCAGCCCAG
CCGGGCCCTGGAGTGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGGGGTCGTCTTGGATCC
AGAGCCTGCCGGTGTCTGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.10718913
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ren et al., 2018