Detail information of BGIOSGA003980_circ_igg.1


General Information
CircRNA Name BGIOSGA003980_circ_igg.1
ID in PlantcircBase osi_circ_010315
Alias Chr01:25609822_25612410(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 27278471-27281060  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003980_circ_ig.1 BGIOSGA003980_circ_ig.2 BGIOSGA003980_circ_ig.3 BGIOSGA003980_circ_ig.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGCAGCTCATGTCCAAACAATATGGTCTATGACGAACACAGCACAACTTTCAGGAGCATATG
ACCGAATTCTTCAATGTAGAAGGAACCAAAGTGCACcaagtgatgttcttcatgtgtacttatt
taggactctgaagagcaagatggacagctctcagactgcactgagaagggctggtgccttacca
atcctgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTGATGTTCTTCATGTGTACTTATTTAGGACTCTGAAGAGCAAGATGGACAGCTCTCAGAC
TGCACTGAGAAGGGCTGGTGCCTTACCAATCCTGCTCAGCCATGGAAGAGGTGAGCAATGCAAT
CGTTTTGAACTAGATGTGTATAAAATGTAATGATGCTAAAAATGTTCTACTTATTTTTGCCTTT
GCAGCTGATGAGGTTGTCACCTACAGAAATGGTGAGAAATCAGCCGATTTCCTGCGAGGCTCGG
GTTTTCAGTATCTGAATTTTAAACCCTACAACGGGTATAGACACACTTACTTAATTTTCCCCAT
CTTCATTTTTTTCTCTGAAAACTAGAATAACTAACATGATGCCATTTACACAGCCTGGGGCATT
ATACCATCCCTGAAGAAATGGACGATGTCTGCAAGTGGCTCAGTTCAAGGCTGGGACTTGACCG
ATCCCGCGGCTAATTCGAAAATATGAACCCGGTTCAGTGGCTTTGGTAGTGATGTATAAGAGAA
GAAGGTATTGACAATATACAGGAGAAGGTTGATTAGGATATGTGAATTGTGACAGTCATGGCTT
AGGTAGCATATGTAACACTATGTGTTTTCCAAACAACTGCATACCACGTTACAGTTGTAGTTTT
CTACTGATGTACTTTGTTACCGCTAAAGAGGGATGCGTATAATGTAGTATTGTATTGCTTGTTT
GATACTTTCGTTACTAATGCTATCGAGCCTCACTAATCTTGCAGTCATAATATATTTGTGCTCT
AGATCATGTTAGTGTACTTCGTTACATGATATCATAGTCCCCTGGACCAACAAAAGATGAGAGA
TTTAAAAATTAACCGTACGATTTTATCACAATTTCAAGGTATCATAATTCATAAATCATAACAA
GATGATAAGGTGTTACTATGAGCTGTCTAAAGTATAGATAATCTTTCAGCAGCAGACATACCTA
TGTTCTTGAAGGTGGTTTGTTTAGGGGGTGACCATTTTGCTGAAAGTAATCTCCATCACCAATA
TGTTTGAGAAACCTTCTGATCTCAAGGCCATCATCACTGCACAAAGGAACAAATCATAAAAATA
TTGACTAATCGTGAACACATTACACATCATAAAAATACTGTATATCGTACAACCATAGAATTTC
AAGCAACTAAATGAAAATAGGCTAAACAGTAGAACAGGTGCATAAATAGATCACCAAGATGATT
ATCACATCAAAGAATCAAACCACCGCCTTTTCTAGTTATCAAACTTTACTAGTTGAAGTTCAAC
ACACAAGGACAGTTACGAATTATATGGATCAACATTCCAAGGACAGCCAACTATAATATTTTTT
TCCATCATACTTGATTGTGTTGGCCAATGCCTCTTGTCGTCTACAATTTGTACTGTCCCATTAT
TGTTCCACTGGAATAGCCAGATGTCCCACTAGAATCGCCATTGTCATCAAATCGTTGTATATCT
GTGTCAGTCACTGACATTAAAGAAAAAACTTAACCATTAGAAAACCCAAAAAAAAAAGAGAAAG
AAACTAAGAAAGAAAGAAAGAAAATATGCTAAGGAACATGAATGAACGTCTGATGCAGCACTCA
CCATCTTTTGCATTCTGCCACACCCTCTGCAATGGCATCTCGCGGTACACGCAACTTTGTTTTT
CAAATCACAAAGCGAACGTAAGATTTGCACGACACGATCATCACAAAATAAGCATCAAAGGACA
GTAGCGCATCCGTACGTAATTCCGTTTACCTTGAAGGCACTCACAGTAAAGCTTCCTGCATCCA
GACTTACAGCAAGCGCATCCCTTCACTTGGTTCCTCACGCTCGCCACCATCCTGTTCATCCAAA
GATTCAGAACAATAACCTGAGCCTAACTGAACAAGAAAACACAGTGTAGAATCAGGTATTGGCA
CTTACCACAGCCGAATCGGCTAAGCCATTTGCACTGACATCGACGATCTTTGGTCTGAATGCCT
AAGGCTTCTTCAGTATCAGCTTGGAGCAAAACCACATGTTGCTGAAGCACTCACAGTATCTGCA
GTTCAAGAAATGGGGGGAGAAGAAGAGAAAGCTGTATGCCTACAGGTCAAACATAGAAATATTT
TCAGTAGTTTTTAGAGAGTTAATTCTATTCGTAGGATTTTTCACAGAAAAAGAAGGAAATGAAA
TTCAGTGTGCTCAGATGGTGGATCAATGGGCGTCAGTTTCCTTCCATACCATTGGAGGCAGTAA
CTACTCTTGTTGCAACGGCAGAGATGGCGGTTCCTCTTGGCCCATACTGAACCGTTGAAGAGGA
TTAGACGCAGATGCAGCCTGCCATCGAATACAGAAACTGACACAGCTTCAAATATTGTTTTTTG
CTGTATGTCTATTAATGCACAAAGTAGAGTCTATCGATTGTATTATACATATGATAGAAGTGTC
CATCCAATTTTTCTAATCAACAAGAAGACAAGTTAAGGCTACGCGCCTAAGCCCACAAAGAGCA
GCTCATGTCCAAACAATATGGTCTATGACGAACACAGCACAACTTTCAGGAGCATATGACCGAA
TTCTTCAATGTAGAAGGAACCAAAGTGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021