Detail information of AT1G33410_circ_g.4


General Information
CircRNA Name AT1G33410_circ_g.4
ID in PlantcircBase ath_circ_005544
Alias NA
Organism Arabidpsis thaliana
Position chr1: 12114324-12116658  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G33410
Parent gene annotation SAR1
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G33410.2:7
AT1G33410.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAATGAGTAGTCAAAAGAAGATCATGTGAAGAGCTCCTAGAACTCAGAAATAGCTGTTCAGAA
ATGTAGTCTTCCTGCAACGTGTAAGACTGCGCTTCCctgaagaagcagcggatggcatcaataa
tctttctctctcttaatatgccacttgcaccacgttgtacttgatcaagaaggcaacaaccacg
gagatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGAAGCAGCGGATGGCATCAATAATCTTTCTCTCTCTTAATATGCCACTTGCACCACGTT
GTACTTGATCAAGAAGGCAACAACCACGGAGATGTTGAAGAAGACACCAATCTCCACTAGTATC
TTGAGAACATCCAAATGTTTTCTCCCCACGTAAACTTGCCTCCACAACCACAAGGATTCGCTTG
AGAAGGTAATAAAATAAAAAAATCAAAACAGAGAAATCAGGAACTAAGTTCAACTAGCCGTTAG
CAGAATATAACTTTTTGTTGGAAAAGGTCCGTCAAAGAAACAGAGACAATTTTTACCTCAACAG
CATCAGATTGTCCATTCCGAATCAACCTAAGACTAAGTTCCGTGGAGCGTCTTAGCAGTGAAGA
AGAGTCATCTCCTGTTTTACTATACCGAATCCAGCTGATAAAGTTTTGCACCAAACTTGTAATG
ATTTGTGAACTCGGAAGATATCTCAAGTTAAAGCGGCCATCCACAATGCAACTTCGGTCACTAA
AGAGAAGAATAAACGCCAGTGAGAAACCACATTTCCCTAGCATTGCGTTCCATGATCTTTTGTC
AATGCTGCTATCTGCAATAAAAAAATAATTGTTTCCAGTCAAAAATAACTGCAATGAGGTATGA
GCGTTGGGGAATATTTTCCAAGGACAACAACCTACCAATCTGTAGAGATGAAAGTTTCAAGCTG
AAATCTTCCATAGAAGTTGACTCAGCTGGAGTGGTAACAAAGAAAAGGATGATGAGCCACTCTG
AGACAATATCTTGGATCATTGGAAGCAACTCAAGCCGTAGCTTGCATATGTCTTGCTGTGACAT
ATTAACCTGCGGAAAGAAAAAGCCAAAGAAGGGGGATACATCTTGACATTAGTATCAAAATATA
AACTACACTGATTCCAAATAAGGGGGATACATCTTGACAATAATACGAGACCCAGTGGGAACTG
ACCTGCCCAGCGATGTTAAGCAGATAGCTGATGAGTAGGAAGATGTCAAATGCCGACTCAAACA
TCACCTTTACAAACTGAGAAGTGGCTTGGACGAGGATAGAACTACAGATATCAGATAATGCCTC
ACCATCATTTTTCTGCATAGATTTTTTAGGGACCAAATACTGCAAATAGTGCTCCATGATAGTA
AAGACTTTTTCCCAAGATCCAGCCCTTTGACATAGAGCAGAGAGAGACAGCAGCATGTCAATGG
AGAATGTTCTAAGATTTTTATGAGCTTCTAGCTCTTTTTCCCATGCTCTATCAGCACCAAGATC
TGACCAAGTACGTTGACCTATGGTCGTAGAATATCCCGACTCAAGGATGTTAACTAAGCGAGGA
ACGATTTCATCCGATGAGATAATTGGCCTTCCGGTAATTGATTCATAATACATGGCATAAGGAG
CACCACCCCACTGTTTACTGATCTTCGAAGTACATCTTAGTACCTCTGCCAGAATTTCATGGTC
GCTGTGAGACACGCCCAAGTCTAAGCTCGTCAGGTTGCTGTGTTCGGAGGAAGAACCTATCAAA
AGGCAAACACAGTATTAAGTCTTAAGCGATTGAAAATAAACAAGAAATGTTTTGGTCCTAGATT
ATAAATCATGATCATTTACATACCTCCAAGGCTGTGCTCAGCGTTCTCCAATCTAAAAAACAGT
GATACAGAATTATTTCTAACTAAACCAATAACATCTGACTGAACCAACAACGTGCGAGGTTCAT
TATTACTGCACCAATGATGGAGATAGGATGTACAAAAGTTTTTCCACCAATGAAAAACTGAAAT
AGAAGTTTCAGCTGTAACCTGACATAAGAAAAGACATAATTCAGCTTTTATGACCCAGGGTTCA
TGCTAACTAACAGTAGACTGGATAGCATACATTGTATCTACAAGGGACTCTAGAACTTAACAAC
TTAACAAAAACCAAACCTCATGCTCAACCAGTAAAAGAATCTCGCTTGTAAGCTCATCAAGACT
TAAAGATTGAAACTCGGAATCAGTCCAGTTTTTGTTGTGGTCCAGTAAAGTTAGACGTAAGGCA
ACATTGTGAAAAATTCCAGGACAAAGAAGCCTGCGTAAGAAGATTGACGAAATGAATCCCATAA
TTTGATCCTGCAAAGTGCAACATAGGTTAGAATGGACGTAAAAAGTAAAATATTGTATTGGAAG
TTTTGTTCAACAAAACGAAAGCTATGTTTTAGCATAAAGACCTTTGCGGATGAAAACAGTGAAT
GAGTAGTCAAAAGAAGATCATGTGAAGAGCTCCTAGAACTCAGAAATAGCTGTTCAGAAATGTA
GTCTTCCTGCAACGTGTAAGACTGCGCTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.156056463
Functional Information
Coding potential Y
Potential coding position 12116434-12114326(-)
Potential amino acid sequence MGFISSIFLRRLLCPGIFHNVALRLTLLDHNKNWTDSEFQSLSLDELTSEILLLVEHEVTAETS
ISVFHWWKNFCTSYLHHWCSNNEPRTLLVQSDVIGLVRNNSVSLFFRLENAEHSLGGSSSEHSN
LTSLDLGVSHSDHEILAEVLRCTSKISKQWGGAPYAMYYESITGRPIISSDEIVPRLVNILESG
YSTTIGQRTWSDLGADRAWEKELEAHKNLRTFSIDMLLSLSALCQRAGSWEKVFTIMEHYLQYL
VPKKSMQKNDGEALSDICSSILVQATSQFVKVMFESAFDIFLLISYLLNIAGQVNMSQQDICKL
RLELLPMIQDIVSEWLIILFFVTTPAESTSMEDFSLKLSSLQIDSSIDKRSWNAMLGKCGFSLA
FILLFSDRSCIVDGRFNLRYLPSSQIITSLVQNFISWIRYSKTGDDSSSLLRRSTELSLRLIRN
GQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCCLLDQVQRGASGILRERKIIDA
IRCFFREAQSYTLQEDYISEQLFLSSRSSSHDLLLTTHSLFSSAKDQIMGFISSIFLRRLLCPG
IFHNVALRLTLLDHNKNWTDSEFQSLSLDELTSEILLLVEHEVTAETSISVFHWWKNFCTSYLH
HWCSNNEPRTLLVQSDVIGLVRNNSVSLFFRLENAEHSLGGSSSEHSNLTSLDLGVSHSDHEIL
AEVLRCTSKISKQWGGAPYAMYYESITGRPIISSDEIVPRLVNILESGYSTTIGQRTWSDLGAD
RAWEKELEAHKNLRTFSIDMLLSLSALCQRAGSWEKVFTIMEHYLQYLVPKKSMQKNDGEALSD
ICSSILVQATSQFVKVMFESAFDIFLLISYLLNIAGQVNMSQQDICKLRLELLPMIQDIVSEWL
IILFFVTTPAESTSMEDFSLKLSSLQIDSSIDKRSWNAMLGKCGFSLAFILLFSDRSCIVDGRF
NLRYLPSSQIITSLVQNFISWIRYSKTGDDSSSLLRRSTELSLRLIRNGQSDAVERILVVVEAS
LRGEKTFGCSQDTSGDWCLLQHLRGCCLLDQVQRGASGILRERKIIDAIRCFFREAQSYTLQED
YISEQLFLSSRSSSHDLLLTTHSLFSSAKDQIMGFISSIFLRRLLCPGIFHNVALRLTLLDHNK
NWTDSEFQSLSLDELTSEILLLVEHEVTAETSISVFHWWKNFCTSYLHHWCSNNEPRTLLVQSD
VIGLVRNNSVSLFFRLENAEHSLGGSSSEHSNLTSLDLGVSHSDHEILAEVLRCTSKISKQWGG
APYAMYYESITGRPIISSDEIVPRLVNILESGYSTTIGQRTWSDLGADRAWEKELEAHKNLRTF
SIDMLLSLSALCQRAGSWEKVFTIMEHYLQYLVPKKSMQKNDGEALSDICSSILVQATSQFVKV
MFESAFDIFLLISYLLNIAGQVNMSQQDICKLRLELLPMIQDIVSEWLIILFFVTTPAESTSME
DFSLKLSSLQIDSSIDKRSWNAMLGKCGFSLAFILLFSDRSCIVDGRFNLRYLPSSQIITSLVQ
NFISWIRYSKTGDDSSSLLRRSTELSLRLIRNGQSDAVERILVVVEASLRGEKTFGCSQDTSGD
WCLLQHLRGCCLLDQVQRGASGILRERKIIDAIRCFFREAQSYTLQEDYISEQLFLSSRSSSHD
LLLTTHSLFSSAKDQIMGFISSIFLRRLLCPGIFHNVALRLTLLDHNKNWTDSEFQSLSLDELT
SEILLLVEHEVTAETSISVFHWWKNFCTSYLHHWCSNNEPRTLLVQSDVIGLVRNNSVSLFFRL
ENAEHSLGGSSSEHSNLTSLDLGVSHSDHEILAEVLRCTSKISKQWGGAPYAMYYESITGRPII
SSDEIVPRLVNILESGYSTTIGQRTWSDLGADRAWEKELEAHKNLRTFSIDMLLSLSALCQRAG
SWEKVFTIMEHYLQYLVPKKSMQKNDGEALSDICSSILVQATSQFVKVMFESAFDIFLLISYLL
NIAGQVNMSQQDICKLRLELLPMIQDIVSEWLIILFFVTTPAESTSMEDFSLKLSSLQIDSSID
KRSWNAMLGKCGFSLAFILLFSDRSCIVDGRFNLRYLPSSQIITSLVQNFISWIRYSKTGDDSS
SLLRRSTELSLRLIRNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCCLLDQV
QRGASGILRERKIIDAIRCFF(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017