Detail information of BGIOSGA035260_circ_g.1


General Information
CircRNA Name BGIOSGA035260_circ_g.1
ID in PlantcircBase osi_circ_009016
Alias Chr11:18628483_18631033(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13326006-13328550  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA035260
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA035260-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGAT
GAAGAGCTATGGCGACATATGGAAATCACTACAAAGgtgtgcagcttctgttgggatatctgcc
aactgagcgtgctttttggcctcatgagctagaaaagaagcggagccagtatagtgcatataaa
gatgaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTTTTGGCCTCATGAGCTAGAAAA
GAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTGTAAGTTATGATTGC
CCCTCTAAAATATTTATTAAATTACCAATGAAGATTTATTAGTCCAAAAGACTTTTTTTATTAT
CCTTTGTAAGGAATTTTAAGCCTAGTTTGGCTAGGCCAAAACCCTGGTCCATACCTGGAGATTT
TGGCCTTGCGAAACAAGTTGTCAATTGGTTGTGTATGAATACACTGATATTTTCTTTTGACCAG
TCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACA
AAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCCTTTGAGCTTTGGTAAATC
TAGCTTGTGGAATCAATACTTCCAGGTATTACTTATTACCATCTTAAATAAATCCTCAAGGCTT
GTTGGGAACCCATGGTTGCCAGCTGGTTCCTTCACGGGTATTAACTCTTATGGTCCCTTCAAGG
AATTGTGTTTAGTTAATCTGAAACATTTATAATGTATTTACTTTATGAGAAATTGTTTGGACTG
CTTTTAAGTTGTTTGGTGGTTGGTATTATGAGTTTGTCTGTGCTCATGATGATTGTTATATCTA
GATATGGAATCTTAATTTCTTATCCTCATTCTCATTATAATCTTTAATTCTTTCTAGTTAAATT
GCTGGTAGGTACAGTTTCTTGTTATTGTTATTTTTCTGATCTGGCTGTGGGATTTTTAACAGTA
TTTGCATAACATGTGGTCTGTGAGGTGTGTACAGTCCCCAGTATTTCCCACCAGTCTGTGGTCA
TTGTTCTTTTCACTAGGTTTTGATTTTGTTCTGTTCGGTATGTTGGGGCTCATATTAAGTTCCC
ACATTGCATTTGTTGTCCGTCTTCAGAATTGCATGCCTTTCACTGGACCTAGTTTTGTGTAATA
CCTCAGCTTCTGAGATCTACATTAGCTCATCTCTTCCTTAGGAGCAAGCCCCACATATGCATAG
CACCCCACTTTGACACTTTTCTCATTGTTGCTGTATAAAATGGTTAATCTGGAGGTGCCATGGT
TAAAACATTTGTGCTTATTTATTGGGCCCAACCTATCTAAACTCCTCTTGTGAGACTAATCCTA
CTAATACAACACCATGGGCCACACGGCCCTCTACTAATGGTCAGGGTATTACATTTTGTTTATG
CACTGTTGTGAAAAGCTAAGGACAAGCACTCTCTCGATTTTTATTTACATGATGTTTTTGGGCT
TTGTCATAGTCCAAGATGTAGCTTTGACCTTAATTGTAATTTTTTTATGTTAATACTAAGTGTT
TGTAAGTATTTCTAATAGCAAATGTAATGATATTTTTTTAATCACCATTCTGTATATTCATAAC
ATGTGGAGGATCAATTTTAGAAAGTTTAGTTTCACGGGTTTTGATTTTAGGATGCAAATAAAAA
TAAATGAAGGGAATATATTGCAAGGAAAGAGGAAAGTGCACAACTGTTTAATCCTTCTGAATTC
TGTATTGAGCGATGCAAAAACATTTATGTTTTCTCGCCTATGTGTTTGATATGCACTGAACATT
TATGTTCTGTCTAGTCTAGATGTAAATTTTTAAACATGGTTTTCTGGCATGGCAGCCACAAGAT
TTCATTTGTTCTTTTTCTTACATTCTGATAAATGTAAATTTACAGGAATCAGAAATCCTGGAAC
AGATAGATCGAGATGTGAAGAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCA
GGTTTCACTTCAGTGCCTTGGAATTCCTTATTTCCATTTAAACTACAAGTAATTGTCATTTGGA
CTAAATTTTTCAAACACATTTCAGGAATCTCTAAGGCGTATTCTCATTGTCTTCTCAAAATTAA
ATCCTACCATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAA
GAATGACCCTGATACAAGCAATTCAGTATGTTCTTTTACTGTTTGATCACATGGTTTTAAATGG
AACGTTTGAATGTTGACAAAGGAGGAATTTATCTATCATAAGGATATCTATCTGCTTTTTCTCT
CTCGCTCATTACATGGAACTCAAAAACTTTATTGTGGATATTTTGAGTTTCTAAAATCAACACT
AAATGAATTCTTTCTGGAGAATTAGAATAGCTCATTTATATGAATATTAATTCACAACTTGGTC
TGTTTTATGATTGGTTCTAAAATGTGTTCATTAGCTGAACCATTCAATTTTGGAATTACAGGCC
TCGGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACT
GTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTT
GAAGAGACATGATGAAGAGCTATGGCGACATATGGAAATCACTACAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5543
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021