Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011595_circ_g.1 |
ID in PlantcircBase | zma_circ_009745 |
Alias | Zm08circ00065 |
Organism | Zea mays |
Position | chr8: 155351169-155369480 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d011595 |
Parent gene annotation |
Two pore calcium channel protein 1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011595_T021:8 Zm00001d011595_T010:10 Zm00001d011595_T008:10 Zm00001d011595_T013:10 Zm00001d011595_T011:10 Zm00001d011595_T014:10 Zm00001d011595_T022:10 Zm00001d011595_T025:10 Zm00001d011595_T016:10 Zm00001d011595_T028:4 Zm00001d011595_T032:10 Zm00001d011595_T026:10 Zm00001d011595_T020:10 Zm00001d011595_T004:10 Zm00001d011595_T029:10 Zm00001d011595_T018:4 Zm00001d011595_T030:10 Zm00001d011595_T005:10 Zm00001d011595_T017:10 Zm00001d011595_T012:10 Zm00001d011595_T009:10 Zm00001d011595_T033:10 Zm00001d011595_T007:10 Zm00001d011595_T027:10 Zm00001d011595_T015:10 Zm00001d011595_T023:9 Zm00001d011595_T031:10 Zm00001d011595_T006:10 Zm00001d011595_T034:10 Zm00001d011595_T019:10 Zm00001d011595_T001:10 Zm00001d011595_T024:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.087767484 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
155369472-155369274(-) |
Potential amino acid sequence |
MCAVTLVGIVGTYLNVLALSLLFLLFASWLAYVTFEDTPQGKTIFTSYGTTLYQMFVLFTTSNN PDVWVPAYKSSRWNALFIVIYVLLGVYFLTNLILAVIYDSFKEQLAKQLAQMDSIRKSILQKAF DLIDTNGQGYLNKEQCISLLDELNKYRSLPKTSREDFELIFSELDRSGDFKVTSEEFADLCNTI AIKFQKEPPPSYLEKYPSFYHSPQCERLKSFVRSRLFEYIVVFVLLVNLIAVVIETTLDIENSS SQKVWQEVEFVFGWIYVVEMALKIFSLGFGAYWMEGQNKFDFVITWTIWNCECALLRWLVLLGH TLMFWLCHCCSYYLQAG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |