Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d004843_circ_g.5 |
ID in PlantcircBase | zma_circ_003953 |
Alias | cold_test_circ_001501 |
Organism | Zea mays |
Position | chr2: 143856208-143856497 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d004843 |
Parent gene annotation |
abscisic acid stress ripening2 |
Parent gene strand | + |
Alternative splicing | Zm00001d004843_circ_g.1 Zm00001d004843_circ_g.2 Zm00001d004843_circ_g.3 Zm00001d004843_circ_g.4 Zm00001d004843_circ_g.6 |
Support reads | NA |
Tissues | seedling |
Exon boundary | No-No |
Splicing signals | GT-GA |
Number of exons covered | Zm00001d004843_T002:2 Zm00001d004843_T005:1 Zm00001d004843_T003:2 Zm00001d004843_T004:2 Zm00001d004843_T001:2 |
Conservation Information | |
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Conserved circRNAs | ecr_circ_000655 |
PMCS | 0.32132273 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |