Detail information of BGIOSGA011665_circ_ig.2


General Information
CircRNA Name BGIOSGA011665_circ_ig.2
ID in PlantcircBase osi_circ_004471
Alias 3:544699|544983
Organism Oryza sativa ssp. indica
Position chr3: 544699-544983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011665_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCGTGGTCGTCGGTGAGGCAGCCGGGCAGGCCGACTCCCATGCATGGAAGCTCGCTTCAGGG
TCAAGTCAACTGATTATGTTTTTCATTAATTTGTTGatctcattgagaaagagaagagaagaga
tattcttttttccaaagaagaaaatcttggccgcgcgcgcgagatctttgcgcaaaagatgata
tatgatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTCATTGAGAAAGAGAAGAGAAGAGATATTCTTTTTTCCAAAGAAGAAAATCTTGGCCGCGC
GCGCGAGATCTTTGCGCAAAAGATGATATATGATGCCTGATCGATCTTCTCGTTTCGGATCTTA
TTATTGCTCGGCTAATTAGTATTATTAACGCTGCTAGCCAGGGCCTTCGATCCGCGTGGTCGTG
GTCGTCGGTGAGGCAGCCGGGCAGGCCGACTCCCATGCATGGAAGCTCGCTTCAGGGTCAAGTC
AACTGATTATGTTTTTCATTAATTTGTTG
Conservation Information
Conserved circRNAs osa_circ_017442*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021