Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d008256_circ_g.1 |
ID in PlantcircBase | zma_circ_009529 |
Alias | zma_circ_0002958 |
Organism | Zea mays |
Position | chr8: 3194674-3207646 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d008256 |
Parent gene annotation |
NEDD8-activating enzyme E1 catalytic subunit |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d008256_T002:6 Zm00001d008256_T001:5 Zm00001d008256_T004:6 Zm00001d008256_T003:6 Zm00001d008256_T005:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.127159186 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3194724-3194700(+) 3194760-3207635(-) |
Potential amino acid sequence |
MERVNGVNIVPHFCRIEDKEIEFYSQFHIIVLGLDSIEARSYINSVACGFLDYDSSDNPLQETV KPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD EVHPGKPFDGDDAEHMQWIYSEALKRAELFGISGVTYSLTQGVVKNIIPAIASTNAIISAACAL EALKLISGCSKSVSNYLTYNGLEGTHIKVTEFVRDKDCLVCGPGTLVELDTSSTLSDSSRCWEV QG*(+) MRNYVHPINSLHNPLRCYFSLGLPNILNYLKE*(-) |
Sponge-miRNAs | zma-miR319a-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |