Detail information of BGIOSGA014002_circ_g.2


General Information
CircRNA Name BGIOSGA014002_circ_g.2
ID in PlantcircBase osi_circ_013922
Alias Chr03:39169346_39170662(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 40842185-40843499  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014002
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA014002_circ_g.1 BGIOSGA014002_circ_g.3 BGIOSGA014002_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA014002-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATTGAGAAACTCCAAACGGAAATAGAGAATGACAGACAGGCTGTTGTGCAGCTTCAATATGA
ACTTGAAGTTGAGAGGAAGGCTTTATCAATGGCCCGggaacacttcctccaaagtgtatccagc
aatgtatattgagaatgtgactgaacttgcctttgatgatatcacacctgaagattttgatttt
ccatttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGA
TGATATCACACCTGAAGATTTTGATTTTCCATTTATACAAGGTGAGAAGAGAATAGTGTTGAGG
ACAAACTACATCTTTAGTAAAATTTACTATGTTTTCATGAACTAATGATATTTGTACATCTTTC
AATATGCCCATAGGCTTGGCAGAAGCTGGGTTGATTTCCAGCAAGCTTTCGAGATCTGATATGA
ACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGGTGATTCTCTAACCC
CCAACGCAACCCACACCAAACACCCACACACCCACACAACGACACACACCTCTCTACCACAAGT
GCAACCAAAACAGTCCTAATAATTTGTCCTTACTGCAGTCCTGTGTCACGTCAAGACCTCGTGA
GTTGGAAGATGGCTTTGGATAAAAGGCAATTACCTGAAGTGGACAAAACTGTGAGAAATGAAAA
GATTCTTATCCTTCTAAGTTGGTATAAAAGACCAGCTGGTTGTTCTGATGTTAAAACTTTCTGT
GGGCAGTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTGCTTGGC
CCGCTTTGGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACTGCTCTTGCATTTGGTAGGGT
TTTATACCACATATCCACACACACACACACACATATTTTCCCTCTTTTATTCTGAGTAATCACT
AAGCTCTTTTCAAAGGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGT
GGCTCTTGCACTTTCAACTGGTGATTCTGCTGATGTGGTTATGGAGGAGCTTGCTCGTATTGAA
GCAGAGAAAATAGCTGAAGATGCTGTAAATGCACATGGTGAACTCGTTGCTCAGGTTGAGAAAG
ATCTGAATGCCACTTTTGAGAGAGAGCTTACAAAGGAAAGAGAAAAAATAGAGACACTTGAAAA
GTTAGCTGAAGAAGCTAGGGTTGAATTGGACAAGTTGAGAGCAGAAAGAGTGGAAGAAAATAAT
GCTCTGATTAGGGGCAGAGCTTCTGTTGAATCTGAAATGGAAGTTCTCTCAAAATTGAGGAGTG
AAGTAGAGGAACAGCTGCAAAGTGTGCTGAGCAAGAAGGTGGAGATCTCGTTTGAGAAGAATAG
GATTGAGAAACTCCAAACGGAAATAGAGAATGACAGACAGGCTGTTGTGCAGCTTCAATATGAA
CTTGAAGTTGAGAGGAAGGCTTTATCAATGGCCCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR530-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021