Detail information of BGIOSGA034585_circ_igg.1


General Information
CircRNA Name BGIOSGA034585_circ_igg.1
ID in PlantcircBase osi_circ_008947
Alias Chr11:1368368_1370299(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 1007100-1009031  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGTTTGACCAACCACCTTCTTCAAGAACAGATTTCACTAAGCTCTTCGGGGATACTGTCTGA
TAATGGACTATTTCTTTAGCCTCATCAGAAGAGAATctatatgcacaatacatttcctgctaca
tcagctattcaatttttccctagcacttgccctgagtttccattcagaactgctttaaaatggg
cttatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATATGCACAATACATTTCCTGCTACATCAGCTATTCAATTTTTCCCTAGCACTTGCCCTGAG
TTTCCATTCAGAACTGCTTTAAAATGGGCTTATGATTCCGGGGGAGAGTCGAACTTTGATGGGG
TATCAATTCCCATCATACATTTGAGTCCTGATATCAAGATGATCAGCAGCACTATTCCCTGCAT
ATAATACATAACTGTGAGAAAATAACTCTTGGATAACAGATATTGATAGAGATAAACATTTTAC
AGGTGAAGTAGCAAAGATGTAATTCGCAGTTTGCAGTCAAACCAACGACAACATTGAACTACTA
CTAAACTGATTACCGTTTTTGTTTGATATGTACGGGCTTAAGTTCACGTTGACAGAAAGAAAGG
TAAACAAAAACATAGGAGTCCATGAGACAACTTACAACAAAGCTTCCTTCCAGCAGAGTTGATT
TTACTAAGCACTCCCCGTCACATTTTCCACGGCCAGGTTTAGTAGTATTGGTCTTCTCTGCGAG
GTACCTGCCTAATGGTAGGTTTGAAGGGTTCTCTAGCAAACCAAAGGGCTGAGAAGCATAAAGA
ATCGTATATTTAGCTCCAGTCTTCTTCAGCAGAGTAACCAGCTCAGAAAGCAACTCCCCTACAG
AAACAACAGCAAAACATTAGGGTACAGTTGTATATTCGAGGTGAAAACACCAACCTAGCATCTT
TGACCTAACCTTCTGATTTTGTGTTATCCTTGAAACCACCATCACAGAAGACAATCAGATCAGT
CTGTCCACTCGGGTTCTTTTTAGTTTGTGATGCCACCAATCCCTGGAATGTACATGTGGTCAAT
AAATGGAAAAGAGGAATTGGAAGAAGTACCAAAAGAACTATAAAAACTTACATGAATGGAATCC
ATGTTGTGATGTTTGTTCAGATCTTCACTTACAGAACAGGTGTCTGTGTAGGTGATATGATTAT
CTCCGAAACCATTGTTGCAATTCTCAGCAAACCCAGATAGCAATGACTTCTCCAATTTGTCATC
ATCTGACATGGCAATGTAGGGGAATGCCATCGAAAACTCGGAGCTTGCAAACGAGTTCTAGTAA
AGAACATATATGTTATAAGCATTTAGAAATCTTTAAGCTTTCAGTTATATAACAACTACGGGAG
ATACAAATATGTGGATGCGTACATCCGTTATGGATATCGAGGTCGGTTTAATCCATTATCTGAA
AAAGGGGAGATACAAATATGGGGGAAGGGCAAAAGAAGAGCAATTATGAATACCTTCAGCGTGT
CTACTAAAGTAGAATCAGCTTGCTTATCTTTAGAAATGTCTGACGATTGTAGCTACAGGAACAA
TAAGTTATCAGTCAGTTTCAACTGACGCATTGAAAAATTGAAACAACATCATAACATGAATTAC
TTGGTCTGGCAATAATTTGACATACAGATTCAAACATGAGAATTTGGCAATGTTACAACCTCTT
AGTATTGATCATTACCATCTACCAGAAACACTAAGAAGAAATGCACTCCAGTTCTTTTATCAAT
GTGGAGTGAATTGATAATTATGCACACATTGCAACCAGTGAAGACCTAAACACTAGTTCACAAA
CAGTACGGAATGAATGGGAGTCAATAAGTACCTTCGAGCCAAGAAAAAGAACTGCAACATCAAC
ACTCTTTGCATGATCCTCCCTTGAACACTAAAAATAAAATCACAATGTTATGAATTGTTTAAGA
CTTAAATTTTGTGCACAATAAGAACAGATACTGCAATGAAGTTGGCCAGTTGTTCGTGAATTGA
GGTGCATCAACTAGGACGTGGGGGGAACTCAACTCACCACCAAGTTTGACCAACCACCTTCTTC
AAGAACAGATTTCACTAAGCTCTTCGGGGATACTGTCTGATAATGGACTATTTCTTTAGCCTCA
TCAGAAGAGAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021