Detail information of AT2G30480_circ_g.2


General Information
CircRNA Name AT2G30480_circ_g.2
ID in PlantcircBase ath_circ_015657
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12990844-12992970  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder
Parent gene AT2G30480
Parent gene annotation unknown protein
Parent gene strand -
Alternative splicing AT2G30480_circ_g.3
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G30480.9:9
AT2G30480.11:7
AT2G30480.1:9
AT2G30480.8:10
AT2G30480.3:10
AT2G30480.13:10
AT2G30480.6:9
AT2G30480.5:10
AT2G30480.10:10
AT2G30480.7:10
AT2G30480.4:2
AT2G30480.12:2
AT2G30480.2:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGAAAAAGTCACTCACAGCGGCTACTTTCCGCCTCGATCCTCCCATCCATTGCAGCATTCGT
AGAAATTCCGGTTCTTAGAGTTTTCAAATTGTACGAcattccattcatcgtcagagaacctgct
gttgttgaaatctgcaacgtcacagaagtaatttctagagtcgctatattgtttgtgcaagtga
tcactgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1126
Transcript exons: 12990844-12991048,12991141-12991237,12991394-12991448,12
991576-12991671,12991853-12991974,12992114-12992156,1299
2225-12992281,12992423-12992607,12992705-12992970
CATTCCATTCATCGTCAGAGAACCTGCTGTTGTTGAAATCTGCAACGTCACAGAAGTAATTTCT
AGAGTCGCTATATTGTTTGTGCAAGTGATCACTGAAAGTTTGCAGTTTTTGCTTTCTGCCCCCA
TCTTTAGCATGTATGCCAATTGGAGACCTATAAAGGCTGTCATCTTGGAACATTTTGCTACTTT
GAATCATTGTGTCCACTTCGTTCTCAAAGTCGTTGAGCCTTCCCCTGACATGTGATGTATCTGG
TTGACCAGTATCCTTCCATGGAGAGGAGCACCGGTACACAAAAGTTCTGTCTGATGGTTGTGGG
GAATTAACTGGAGTTTCCGTGTTTATTTTACCTAATCCTTCGACTGAAAATGCCATGTGAGCCT
CAGACGGAGAACATTCTTCCAGGTTGGTTGTTGTATGATCATCACCAACCAAATCAAAGACAGA
TAACTTCCGCTCAGTGCCATCCATCAGATCTGCGGTGGTGTTTGTTTTCTTGAAATCATTTGTC
TGGTTGTCAGTGTTTGCTTTCTTGAAATCATTTGTCTGGTTGTCAGGGATACTAAACAAAGTCC
TCTTAGAGGAAGTAGGTTCTGCTATATGGTTAAATGAACTTCCTACTCCGGACATGTTGTCCTT
AAGGCTGTAAAAATCAGCATCCAGATCTTGCATTCCATTTTCTGGACCAGAAGGTTTGCATTCA
GGAGTAGCGGTTGACAAATTCAGCAAATTGAGAATATCCAGAGATTGGTGTTCTCTTAAGTGTT
GATTACTATTGTTTATATCATTACTACAGCTCTCAGACCCAACTGTGAACTGATGCTGTTGCTG
TCTCCTCTGCTCAAAATATTGTTTTTGCCTCTTCTTCACTGACGTGTGTGACTGATTACCCCAA
AAGGTTCCCAGAAAACAATAACAAGTCAAAATGAAAACAAATTATAAGAAAAATAAGCTATTAT
CCCAACACCAAGAGGTTTTAGCTTCACCCCATTTATAACGGACCTCTGAATTTGAAATATCACT
AAAAGGAAAAAGTCACTCACAGCGGCTACTTTCCGCCTCGATCCTCCCATCCATTGCAGCATTC
GTAGAAATTCCGGTTCTTAGAGTTTTCAAATTGTACGA

Transcript length: 965
Transcript exons: 12990844-12991048,12991141-12991237,12991394-12991448,12
991576-12991671,12991853-12991974,12992114-12992156,1299
2225-12992281,12992423-12992607,12992705-12992727,129928
89-12992970
CATTCCATTCATCGTCAGAGAACCTGCTGTTGTTGAAATCTGCAACGTCACAGAAGTAATTTCT
AGAGTCGCTATATTGTTTGTGCAAGTGATCACTGAAAGTTTGCAGTTTTTGCTTTCTGCCCCCA
TCTTTAGCATGTATGCCAATTGGAGACCTATAAAGGCTGTCATCTTGGAACATTTTGCTACTTT
GAATCATTGTGTCCACTTCGTTCTCAAAGTCGTTGAGCCTTCCCCTGACATGTGATGTATCTGG
TTGACCAGTATCCTTCCATGGAGAGGAGCACCGGTACACAAAAGTTCTGTCTGATGGTTGTGGG
GAATTAACTGGAGTTTCCGTGTTTATTTTACCTAATCCTTCGACTGAAAATGCCATGTGAGCCT
CAGACGGAGAACATTCTTCCAGGTTGGTTGTTGTATGATCATCACCAACCAAATCAAAGACAGA
TAACTTCCGCTCAGTGCCATCCATCAGATCTGCGGTGGTGTTTGTTTTCTTGAAATCATTTGTC
TGGTTGTCAGTGTTTGCTTTCTTGAAATCATTTGTCTGGTTGTCAGGGATACTAAACAAAGTCC
TCTTAGAGGAAGTAGGTTCTGCTATATGGTTAAATGAACTTCCTACTCCGGACATGTTGTCCTT
AAGGCTGTAAAAATCAGCATCCAGATCTTGCATTCCATTTTCTGGACCAGAAGGTTTGCATTCA
GGAGTAGCGGTTGACAAATTCAGCAAATTGAGAATATCCAGAGATTGGTGTTCTCTTAAGTGTT
GATTACTATTGTTTATATCATTACTACAGCTCTCAGACCCAACTGTGAACTGATGCTGTTGCTG
TCTCCTCTGCTCAAAATATTGTTTTTGCCTCTTCTTCACTGACGTGTGTGAAGCGGCTACTTTC
CGCCTCGATCCTCCCATCCATTGCAGCATTCGTAGAAATTCCGGTTCTTAGAGTTTTCAAATTG
TACGA

Genomic sequence CATTCCATTCATCGTCAGAGAACCTGCTGTTGTTGAAATCTGCAACGTCACAGAAGTAATTTCT
AGAGTCGCTATATTGTTTGTGCAAGTGATCACTGAAAGTTTGCAGTTTTTGCTTTCTGCCCCCA
TCTTTAGCATGTATGCCAATTGGAGACCTATAAAGGCTGTCATCTTGGAACATTTTGCTACTTT
GAATCATTGTGTCCTGTAAGAGGGAGATGAAAATATCCGGTCAGGAAAAAAGAGTTAGAAATGA
ATGGAAGACAGCTAAAAGATAAGATGACGAGACTTTGTTACCACTTCGTTCTCAAAGTCGTTGA
GCCTTCCCCTGACATGTGATGTATCTGGTTGACCAGTATCCTTCCATGGAGAGGAGCACCGGTA
CACAAAAGTTCTTTCACATCACAAGTTAAATAAAATCACTGATCTATATCTTAAGTGGTACATA
TTACTGCTAATGTAAGAGAAAACAGTATAAATAAATAAAAAGGAAAACAAACAAAATGCAAACA
AGTCCCAAGAAAAAAAAATACTCGTGAATGCTAATCACCTGTCTGATGGTTGTGGGGAATTAAC
TGGAGTTTCCGTGTTTATTTTACCTAATCCTGAAAGGAGAAAGTAAGAGTCACACGAGAGAGGC
ACAGTAGGATAACCTCTTAAAGACTGATCATGATCTAGGTACACATGGAAAGTTGAAATTTTCC
ACTACTCTGTGATCTCTAAGATCTATACCTTCGACTGAAAATGCCATGTGAGCCTCAGACGGAG
AACATTCTTCCAGGTTGGTTGTTGTATGATCATCACCAACCAAATCAAAGACAGATAACTCTGA
AAAATGTATAATGTCCATGTCAACATAAAATTTGAGACTTGCAGATGGCTAACATTCTGATAAC
TGAGCATGCAACAAAAAGTGATTGCGAAGTCAAACCAGAATGAAAACAAACTACAGTAAACCTT
TCTAGTTTCTAGATATTGTCTCAATACTAAAGTTATAGTGATTACTTACTCCGCTCAGTGCCAT
CCATCAGATCTGCGGTGGTGTTTGTTTTCTTGAAATCATTTGTCTGGTTGTCAGTGTTTGCTTT
CTTGAAATCATTTGTCTGGTTGTCAGGGATACTAAACAAAGTCCTGTAAGAAAGTAAAGCATCA
AAATTTCTATGAAAATGTGCAATTCTGTTAGCAAGATAACCAAGATGATATACATGCTGAGAAA
GAAAACTTGTGCAGTGGCATTATATGAAAGCAAAAACAAAGAAAACTGGCTTGCCTCTTAGAGG
AAGTAGGTTCTGCTATATGGTTAAATGAACTTCCTGCATTATCACATACAACATGAGCAGAAGA
GGACCATATTCATAGATAATGAGTTTGACGACCTTACCTACTCCGGACATGTTGTCCTTAAGGC
TGTAAAAATCAGCATCCAGATCTTGCATTCCTTTTTCCGTTAACAAGTGACACAAACAAGAAAA
ATGCAAAGTGAAATTACATGTCATGGTTCTGAGCGATAAAGCAAATAAATGGTTCATAAACTGA
CTCCAATTATGACTGCTGGAAGTCATAACAAGCATATACTTACCATTTTCTGGACCAGAAGGTT
TGCATTCAGGAGTAGCGGTTGACAAATTCAGCAAATTGAGAATATCCAGAGATTGGTGTTCTCT
TAAGTGTTGATTACTATTGTTTATATCATTACTACAGCTCTCAGACCCAACTGTGAACTGATGC
TGTTGCTGTCTCCTCTGCTCAAAATATTGTTTTTGCCTTCAGGTGCAACAAAGATGAAATTAAA
AGTGTAAGCACAATGGGAAGCATATGCTGACAAACATCTCATAAAGAGAACAAGAAGGAGCTTA
CACACCTCTTCTTCACTGACGTGTGTGACTGATTACCCCAAAAGGTTCCCAGAAAACAATAACA
AGTCAAAATGAAAACAAATTATAAGAAAAATAAGCTATTATCCCAACACCAAGAGGTTTTAGCT
TCACCCCATTTATAACGGACCTCTGAATTTGAAATATCACTAAAAGGAAAAAGTCACTCACAGC
GGCTACTTTCCGCCTCGATCCTCCCATCCATTGCAGCATTCGTAGAAATTCCGGTTCTTAGAGT
TTTCAAATTGTACGA
Conservation Information
Conserved circRNAs NA
PMCS 0.183921106
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017