Detail information of AT1G50030_circ_g.13


General Information
CircRNA Name AT1G50030_circ_g.13
ID in PlantcircBase ath_circ_006558
Alias Ath_circ_FC0728, Ath_circ_FC0729
Organism Arabidpsis thaliana
Position chr1: 18527736-18530701  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G50030
Parent gene annotation TOR
Parent gene strand -
Alternative splicing AT1G50030_circ_g.8 AT1G50030_circ_g.9 AT1G50030_circ_g.10 AT1G50030_circ_g.11 AT1G50030_circ_g.12 AT1G50030_circ_g.14 AT1G50030_circ_g.15 AT1G50030_circ_g.16 AT1G50030_circ_g.17 AT1G50030_circ_g.18
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G50030.2:11
AT1G50030.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGTAATTCAATACTAAAATGTCTCATCCATTCCTCCCAATCTTCTTTGGTGCTGCGTTGAGA
AGCTTCTCCAGCTGTCCGTAGTCTACCATCATTAACctccacattacgcttagatccctgaatc
cgctgagtccacatattacgaattagagctctccgttcttcggcaatagtatttcccacaggca
gcgtataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACATTACGCTTAGATCCCTGAATCCGCTGAGTCCACATATTACGAATTAGAGCTCTCCGT
TCTTCGGCAATAGTATTTCCCACAGGCAGCGTATAATATTCAATTACCTAGTATCGATACAACA
GGGGAAAAAAATAGAAAGATTAATCATGTATATGGAGGGGTGTTAGGGAGGGTGTCCAGGAGAA
GGGATCTTGGATAATTGAGATCTAACCTCCTCTAGTTCTGACAGCTGCTGAACACGAACCATAT
TGCTGTACGCACGCTCATAGCTCTCCAAAACCTGTAGAAGGCGCAAATAGACAATTACAAGTTT
TTCAGTATGCGTGAGCAACTAAGAAGGTAACATGGTGATTACATGATGCTTCTATTGAAAGGAA
CCAACGATAGCATGCACAAAATGTTATTTAAATAGAGCTAAATATGTAACTAAGATGTCAGGAA
TGTATAATCCTACTTCCAACACCACAAGGCGTACTCAAATAGTTTCAAGAACATAATGGAAAAG
GCTGAGACCAGTTACAAATATCTTTGCTGATATACATCTGTTCCCTTTATTCACAACAGATGAT
TCATAGATATTTTTCACAAAAGTTTATAATGAAAATACTACCAGAAATGAAACCTACCAGCGCT
GCAAGTTCTGTGGCAAGACATTTTCTAGCTCTTTCCACATATTCGCGTGCCTCGTCGTACTAAA
AAGGAAAGAAAAATATCCACAGGCACACATACGCAGAAATTAGTGTCTGCAAATAGATTATAAG
TAAGCCTGATAAGATTTATAGTACGAAAATATAGGTCCAAGTGTACCTTTGCCCTTCGAACTAA
CAGAACAGCCCTGAAGAATGTGCCATTACTGCTCCCATCGCCACTAGAAACCGGGCTTGCTAAA
CCCCGAAGCTTTGTTTCATCACCATCATCTAGCCGAGACACATATTCGGCCATTTGATCCCACT
CTCCCATGTTCCATGCAGCTTGTGCAGCCTAGTATGGTTGCAAAAAGACATTATGTAACCATGT
AGCTATATCACCGAATGTAGCATAAGTAGAAGTTACCAACCATTGGTGCCATTTCCAGACGCGC
AGATGGCTCAGCAGGACTCCAGTACTCTTTGCAGAGATTGTTGAGCTCTTCCCATCGTGCAAGT
GCAGCAAGACATCTCATTTGTCCTACAACGTGGTAAATAAGCAATAGAATCAGGCCATTTCATG
AAAAGAAAAGAGAAGCATCATATGAATTTTAGACTGGAAAAAAATGCGTTGATCTGTTGTTCTG
CTAACTTGTAAGAATGTTATGAACCCACAGTTCTCTATGAACTACTAACAGAATACCGACAAAA
AAATGCCAACAGAACTTAGAAAAAAACATTATCGAAGAAAAAAACCCACTAAATCCTCCCAATA
TTAGTCTTGGTTACCACAAACCTAATGTGGCTTCTAATACAAGATGAGGATTTGTTGTTTGAGA
TGCTTTCAAAGTGTACGCCTTGAGTGCATCGTCCCAGCGCTGCAGCTTCTCATACCTAGAAACA
AACACTGTTAGTGCTTTTCCACTGATTAGGATCAAAGAATGGAACCACACACAATCTTGTGACG
GAATGCCTATCAAACAGAACTGAAAATAAGTGCATCATGATTCAGAAAAGCCATGTTACCATGA
TTCTTTTAATTGCACATCAAGATGTTGTTGAGCATAGGTTAGTATACCGACAGCAGCCTATACA
AAGAATTCCAACCAATCAATAATAACAAATATCAAAGATGGTCGAAATAGGATACAAAATACAG
TGTACCTCATGCTGGTGTAACTGATTATTTATGTGTATAAGAGCCTCGACAACAGCAACTGGGT
TGGCATCCATCCTCTTGGATCGTGGACCTTCAAATTCCATCTCTTTATAATGCAGAGCTTTGGC
AAAAACACGGCACTACAAAGTTGGAATATTGCACATTACCAAGAAAATCAGATGAATTCTTGAT
ACGCAAATGAAAAAAGTACCAAATCTAATTTAACTAGCAAATACATAACGCAAACCTTTTCAGC
AAGAGCCCCCAGAAGACGAATATCAATGGGAAGAGGCTTCTCATCATGTTCCATAAACTCTGCC
TAAGAAGAGAAATAATAAAATCAAGCACAAGTGACAGGACCAAGCAACAGGATCACACATAAAG
GTAGGTTGATATTGATTCTGAACTTATGATTGTTTATCCAACCTAAACGTAATATAGATTAAAC
GAAGTATAAGCAGATATTTGGATTATAGTGTTAATATTAGATTAAATAAAAATTACACGTCATG
TTTCCATGTACACTCACAGATCGTTTTGTTGATGGTTTTAGCAACAAAAAACGTGTTTTACATA
GAAAGATTAACAGGTGCAACCGCTAAAGAAATGGTGACCTAAGAAGTTTTTGTTTCCAGTCTTG
GAAAATGTAGTCAACTCATAACAATCGCCTAAGCTAAAACACAAGCACTCAATAAGCACAAGCA
TAGCCACAGGAAACAAATTTGCTGTTCGTTATAGCCAGTGACTCAATCAAAGGTCTTTATCATG
TTTAAGTTTTCTTGTAATGTAACAACGAACATACCAAATTGAGTAGTGTAGCTAAAATTTCTGG
AGGGATATTTGGAGATGAAAAGGCCATTTCCAAGCTCCTAACTAACTGCTTTTGGCTAGACTCG
TTTAGCTGTGCCCAGCAACTGACAAAGCCAGCAGCAAACAACTCTCTCCCGACAAATGGCTGCA
AAACACAATCATTAAAATGCACCCTTTTGAGAGAGGAAAAGAAAGAGCATAGATGAAACACCTG
CAACTGAGCAAGTTTTGCACAAGTTCTTAATGCTGGAGAGGGAGACTCCTTAAGTAATTCAATA
CTAAAATGTCTCATCCATTCCTCCCAATCTTCTTTGGTGCTGCGTTGAGAAGCTTCTCCAGCTG
TCCGTAGTCTACCATCATTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.140215734
Functional Information
Coding potential Y
Potential coding position 18530630-18527738(-)
Potential amino acid sequence MRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSLEMAFSS
PNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFEGPRSKRMDAN
PVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDALKAYTLKASQTTNP
HLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMAAQAAWNMGEWDQMAEYVS
RLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDEAREYVERARKCLATELAALVLE
SYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERRALIRNMWTQRIQGSKRNVEVNDGRLR
TAGEASQRSTKEDWEEWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLN
ESSQKQLVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALH
YKEMEFEGPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRW
DDALKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMAA
QAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDEAREYV
ERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERRALIRNMWTQ
RIQGSKRNVEVNDGRLRTAGEASQRSTKEDWEEWMRHFSIELLKESPSPALRTCAKLAQLQPFV
GRELFAAGFVSCWAQLNESSQKQLVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIR
LLGALAEKCRVFAKALHYKEMEFEGPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQ
HLDVQLKESWYEKLQRWDDALKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEY
WSPAEPSARLEMAPMAAQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFR
AVLLVRRAKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVG
NTIAEERRALIRNMWTQRIQGSKRNVEVNDGRLRTAGEASQRSTKEDWEEWMRHFSIELLKESP
SPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSLEMAFSSPNIPPEILATLLN
LAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFEGPRSKRMDANPVAVVEALIHINN
QLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDALKAYTLKASQTTNPHLVLEATLGQMRC
LAALARWEELNNLCKEYWSPAEPSARLEMAPMAAQAAWNMGEWDQMAEYVSRLDDGDETKLRGL
ASPVSSGDGSSNGTFFRAVLLVRRAKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQ
QLSELEEVIEYYTLPVGNTIAEERRALIRNMWTQRIQGSKRNVE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a