Plant Circular RNA Database

Detail information of Os03g0805100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0805100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_022338
					
						Alias
						Os03circ30238
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 33608368-33611995  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os03g0805100						
					
						Parent gene annotation
						
							Similar to Squalene synthase (EC 2.5.1.21). (Os03t0805100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						6/1
					
						Tissues
						leaf/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0805100-01:7

General Information
CircRNA Name	Os03g0805100_circ_g.2
ID in PlantcircBase	osa_circ_022338
Alias	Os03circ30238
Organism	Oryza sativa
Position	chr3: 33608368-33611995 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os03g0805100
Parent gene annotation	Similar to Squalene synthase (EC 2.5.1.21). (Os03t0805100-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	6/1
Tissues	leaf/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0805100-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGG
TCCATTGCCCTCAACTAGACAATCTATGCGCATCAGaaaatcaatataattagggattatttgg
aggacataaacgagataccaaagtcacgtatgttctggcctcgagaaatatggagtaaatatgt
caataaac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 656
Transcript exons: 33608368-33608472,33608910-33609056,33610408-33610483,33
611140-33611228,33611592-33611683,33611765-33611804,3361
1889-33611995
AAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCT
GGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTC
AGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGC
CTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAA
TGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGAT
GAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCT
TTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAA
CGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGG
ATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCT
ATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGGTCCATTGCCCTCAACTAGAC
AATCTATGCGCATCAG
						
					

						Genomic sequence
						
							AAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCT
GGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGTATACTGTCCATGTATCTTCTT
TTTTCTTACTGAGTACTACCTCCGTCCCAAAATACTTGTCGTTCTAGGTTATTTAGCATGTACT
AAGGTTTGAAGACAAAGACTATAATACCCCTTAATTAATAATGCATAGTTGGATGTGGAATGAT
GGTTGGGGGTATAATGGGGAGAAATTTGAATTGGAAGTGGTTGATATGACAAGTAGTATTTTAA
AGTGACAACTATTTTGGGACAAGTATTGTGGGACGGAGGAAGTAGCTTTAAATTTATTCGAAAT
GATTAAATTGTCACCACAATTGACAAGAGATGCCATTTGAAGTGTTAAATCCAACTGTCAATAA
CCAAATAATATAAATTCATTTATTATGCTGGAAAGTCCACTACAGTTTTATCTATTTTCTGTGT
GTAATAATACACATTTTTTTATAAAATCAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAG
TTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACAT
GTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGGTATATGTTAATCTT
TTATAGTACCAAATTTTTGAACCAATGCAAATTGTGCCAGTCTGTGTCAAATATTAACAGTTTA
TGATATTCTCTTGTGCTTGCTTGCAGTATATAATGATAACTTTTATATTGGCCATGAAGTTTAG
TTAAGCTATTGCTAGTGTACACCTATTGCTAGTGTACACGTCTAGGAAATTTTACTCTTTTTTT
TAAAATATCTGTATGTAATGCTGATTGTAATGCCTAGGGTCCAGGTATGGATCTAAGCCCAACT
CATCTACTTGAACCACACATCTGAGTGACGGTTAACCGGGAATTTATTCTACCAGACTACTACT
TATAAGCTGGTGCACATGGAGCCAGCTAGCCGAGGTGGTACTGAGCAAGCGTTTTCAGGCTATG
CTAGCTAGCGTACTCTTCTGCTATCGATGAAACCGAAAGAAAATACCAGTGCTCTTTCATATAG
ATCGAGATGCAGTAAGACAGGCTTTCTCGAAGTAGGGTTGTACCATTAGAAATAGTTAGGCTAG
GTCCTTGACCCCTACCTTTTCTGAGATTCATGGAATCATCACATTAATTACGCACGAATCAGAA
TGGGGCCTATCTATATTCCAAGTAGTACCCCTCGTCCAGTGAAGTCATGAGGCTAGCCCCCCTG
AATGAAGTAGCGGAGCCCTCTGCCCACAACGCTTTAGCTAATACACAGAAATGCATACCTTTAT
TTTTCTGTAATTCAATGACTGCATGCATTGCTCGGTGAATGTGAAGAACTAGGCTGTTGTCGCG
GCAATAATGAGGCAATCTAAAAAACTAGCTACAGGCTTGCTTGCTGCTGCTGCTGCTCCTGCTC
CTGCTCCTGCATTTGCTGTCGTGTTTACTAGCTAGCGCTATTGCTGCTGTGCTCACATGTGGCC
CAAGGCCAGATGGCTGTTCTGCTTGCTGCTCACTTGCGCCTACGCTAACTAGCTTGCTCATTGC
TGCCTGCTTACTTGCTCTTCTTCTCTATCTTTTCCCCTTCATCTCTATTTTTTTCCTAATTATT
CTGGGGCGTCACAGACTCACAGTAATTTACTGCTATAGCAAATCTTTGTACCATATCTGTGGTA
AAGAGGAGCCAGCTATTTGAATTGGTTTGTTTATTAGTTCATGTTTGATCACTGTTGACATGCT
AAATCTTGGGCCAATGATAGTTGATATTTGTTGGCAGTTGGGTAGCATTCCTCGTTGGTTGAAG
CTGTTAATTGACCTAACATTTTGTGTTTGAGTATTATACACTTCTATTCTTGTAATATGTTTGG
TATGTATTATTTTGGAACAAACTTTAGGATACTAATACATCATTCCATCTTTTCAGATAATGGC
AATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGG
CGTGGTAAGATTACATAAGACATACTAAGTAAATTCAAATTGCAGTAACCTCTCTTTACTTTGA
GGAGAATAGTTATTTTATCTCCATGACCACCTTGTCAGAGTTTGCTTAATGGAATTCAATATGG
ATAGGCTATCCGGTTCTCTTCTTTTGTATGGTTAATTTAAGAGTAATTGTATTTATTTACTCAG
TTGTCAGAAATTGATCAATGTGCAACAATAATCCTATTGGTTACACAATGGAGTGCTCCTGTGT
TCATTGTCACAAGTTGGCATCATTGTAACTTGTGTCAGTTTTGTTGATTAGTGTATCATAAGAT
TTCACCACTTCATTGCTGGCATTTCTTTGTCCCTTTTGGTTTAGACAAAGAATGGTGATTTGTT
GAGTAAGATGACTAGATGAGTATCTTTAGAATTATTGTATGCTTTGTTTTTTGGGCACATGGCT
CCATATCTCAGTAGAACAGCTATAATTTAGTTAGCAGAAGGTGCAACTATAATTTATATATATT
TATCACTGAATTTGCATAGTAGTAATAATTTCCTTAAGCAACTTTATTTTGTTTTGTCACCTTT
ATCTATTATAAACTAAGTACATCTGCTCCAGTCTCTAGTTACCTTTATGTTCTCTCACCTCAGG
AAATTAACATGTTCTCTCAGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGAT
GTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGGTAAGGACCATGATCTTTG
CTACCATGAATGTAGGGTGGCTGTCGCTCATTTCTTCCATATAGATAATAAGACACTCAAATAT
TTCATTTTTTACAATAGATTGCTATCCATCAATTGTATTGCACAAAAATCTTCACTCAGTATAA
TTATTTTTTGTTAATATGTAAACATTTCTTTTGAACTTGTTCTTTGAGCCACTTTTGCATTAAA
TGTTGTGTTGATTTAAGGATCATGAAATTATTTTAGTCTTCAGCAGAATGTTCTAAACAGCAAA
TATAGGATGTGCACTGTTATTTCTGGCCTTCAAAGGCTACCTTAGTTGTCCTGCTCAAGAGTGT
ATGATGTTTTACCCACATGTCCAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAAC
GTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGTTTGTTGGTTG
ATTCTGATTTAGTGTTCCATTTATTTCTGTTGGCATTTCTCATCCCTACCGATCATCTTAATTA
TGCAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGGTGAGAATAATATATAAAC
CTTAAATCCTTTTAGTGATTCTGTTTCTATTTATCTTTCTCAAACTGTTTCTGTGACTTGCTCA
GATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTC
CTAGGTGGTCCATTGCCCTCAACTAGACAATCTATGCGCATCAG
						
					

			
		

Sequences
Splice junction sequence	TTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGG TCCATTGCCCTCAACTAGACAATCTATGCGCATCAGaaaatcaatataattagggattatttgg aggacataaacgagataccaaagtcacgtatgttctggcctcgagaaatatggagtaaatatgt caataaac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 656 Transcript exons: 33608368-33608472,33608910-33609056,33610408-33610483,33 611140-33611228,33611592-33611683,33611765-33611804,3361 1889-33611995 AAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCT GGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTC AGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGC CTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAA TGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGAT GAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCT TTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAA CGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGG ATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCT ATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGGTCCATTGCCCTCAACTAGAC AATCTATGCGCATCAG
Genomic sequence	AAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCT GGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGTATACTGTCCATGTATCTTCTT TTTTCTTACTGAGTACTACCTCCGTCCCAAAATACTTGTCGTTCTAGGTTATTTAGCATGTACT AAGGTTTGAAGACAAAGACTATAATACCCCTTAATTAATAATGCATAGTTGGATGTGGAATGAT GGTTGGGGGTATAATGGGGAGAAATTTGAATTGGAAGTGGTTGATATGACAAGTAGTATTTTAA AGTGACAACTATTTTGGGACAAGTATTGTGGGACGGAGGAAGTAGCTTTAAATTTATTCGAAAT GATTAAATTGTCACCACAATTGACAAGAGATGCCATTTGAAGTGTTAAATCCAACTGTCAATAA CCAAATAATATAAATTCATTTATTATGCTGGAAAGTCCACTACAGTTTTATCTATTTTCTGTGT GTAATAATACACATTTTTTTATAAAATCAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAG TTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACAT GTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGGTATATGTTAATCTT TTATAGTACCAAATTTTTGAACCAATGCAAATTGTGCCAGTCTGTGTCAAATATTAACAGTTTA TGATATTCTCTTGTGCTTGCTTGCAGTATATAATGATAACTTTTATATTGGCCATGAAGTTTAG TTAAGCTATTGCTAGTGTACACCTATTGCTAGTGTACACGTCTAGGAAATTTTACTCTTTTTTT TAAAATATCTGTATGTAATGCTGATTGTAATGCCTAGGGTCCAGGTATGGATCTAAGCCCAACT CATCTACTTGAACCACACATCTGAGTGACGGTTAACCGGGAATTTATTCTACCAGACTACTACT TATAAGCTGGTGCACATGGAGCCAGCTAGCCGAGGTGGTACTGAGCAAGCGTTTTCAGGCTATG CTAGCTAGCGTACTCTTCTGCTATCGATGAAACCGAAAGAAAATACCAGTGCTCTTTCATATAG ATCGAGATGCAGTAAGACAGGCTTTCTCGAAGTAGGGTTGTACCATTAGAAATAGTTAGGCTAG GTCCTTGACCCCTACCTTTTCTGAGATTCATGGAATCATCACATTAATTACGCACGAATCAGAA TGGGGCCTATCTATATTCCAAGTAGTACCCCTCGTCCAGTGAAGTCATGAGGCTAGCCCCCCTG AATGAAGTAGCGGAGCCCTCTGCCCACAACGCTTTAGCTAATACACAGAAATGCATACCTTTAT TTTTCTGTAATTCAATGACTGCATGCATTGCTCGGTGAATGTGAAGAACTAGGCTGTTGTCGCG GCAATAATGAGGCAATCTAAAAAACTAGCTACAGGCTTGCTTGCTGCTGCTGCTGCTCCTGCTC CTGCTCCTGCATTTGCTGTCGTGTTTACTAGCTAGCGCTATTGCTGCTGTGCTCACATGTGGCC CAAGGCCAGATGGCTGTTCTGCTTGCTGCTCACTTGCGCCTACGCTAACTAGCTTGCTCATTGC TGCCTGCTTACTTGCTCTTCTTCTCTATCTTTTCCCCTTCATCTCTATTTTTTTCCTAATTATT CTGGGGCGTCACAGACTCACAGTAATTTACTGCTATAGCAAATCTTTGTACCATATCTGTGGTA AAGAGGAGCCAGCTATTTGAATTGGTTTGTTTATTAGTTCATGTTTGATCACTGTTGACATGCT AAATCTTGGGCCAATGATAGTTGATATTTGTTGGCAGTTGGGTAGCATTCCTCGTTGGTTGAAG CTGTTAATTGACCTAACATTTTGTGTTTGAGTATTATACACTTCTATTCTTGTAATATGTTTGG TATGTATTATTTTGGAACAAACTTTAGGATACTAATACATCATTCCATCTTTTCAGATAATGGC AATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGG CGTGGTAAGATTACATAAGACATACTAAGTAAATTCAAATTGCAGTAACCTCTCTTTACTTTGA GGAGAATAGTTATTTTATCTCCATGACCACCTTGTCAGAGTTTGCTTAATGGAATTCAATATGG ATAGGCTATCCGGTTCTCTTCTTTTGTATGGTTAATTTAAGAGTAATTGTATTTATTTACTCAG TTGTCAGAAATTGATCAATGTGCAACAATAATCCTATTGGTTACACAATGGAGTGCTCCTGTGT TCATTGTCACAAGTTGGCATCATTGTAACTTGTGTCAGTTTTGTTGATTAGTGTATCATAAGAT TTCACCACTTCATTGCTGGCATTTCTTTGTCCCTTTTGGTTTAGACAAAGAATGGTGATTTGTT GAGTAAGATGACTAGATGAGTATCTTTAGAATTATTGTATGCTTTGTTTTTTGGGCACATGGCT CCATATCTCAGTAGAACAGCTATAATTTAGTTAGCAGAAGGTGCAACTATAATTTATATATATT TATCACTGAATTTGCATAGTAGTAATAATTTCCTTAAGCAACTTTATTTTGTTTTGTCACCTTT ATCTATTATAAACTAAGTACATCTGCTCCAGTCTCTAGTTACCTTTATGTTCTCTCACCTCAGG AAATTAACATGTTCTCTCAGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGAT GTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGGTAAGGACCATGATCTTTG CTACCATGAATGTAGGGTGGCTGTCGCTCATTTCTTCCATATAGATAATAAGACACTCAAATAT TTCATTTTTTACAATAGATTGCTATCCATCAATTGTATTGCACAAAAATCTTCACTCAGTATAA TTATTTTTTGTTAATATGTAAACATTTCTTTTGAACTTGTTCTTTGAGCCACTTTTGCATTAAA TGTTGTGTTGATTTAAGGATCATGAAATTATTTTAGTCTTCAGCAGAATGTTCTAAACAGCAAA TATAGGATGTGCACTGTTATTTCTGGCCTTCAAAGGCTACCTTAGTTGTCCTGCTCAAGAGTGT ATGATGTTTTACCCACATGTCCAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAAC GTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGTTTGTTGGTTG ATTCTGATTTAGTGTTCCATTTATTTCTGTTGGCATTTCTCATCCCTACCGATCATCTTAATTA TGCAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGGTGAGAATAATATATAAAC CTTAAATCCTTTTAGTGATTCTGTTTCTATTTATCTTTCTCAAACTGTTTCTGTGACTTGCTCA GATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTC CTAGGTGGTCCATTGCCCTCAACTAGACAATCTATGCGCATCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_013783 						
					
						PMCS
						0.100891343

Conservation Information
Conserved circRNAs	osi_circ_013783
PMCS	0.100891343

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0805100_circ_g.2

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