Detail information of Csa3G131970_circ_g.2


General Information
CircRNA Name Csa3G131970_circ_g.2
ID in PlantcircBase csa_circ_001541
Alias Chr3:8554277_8557481
Organism Cucumis sativus
Position chrChr3: 8554277-8557481  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G131970
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa3G131970_circ_g.3
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa3G131970.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGAGTTGAATTGGGTTTGAAGCGAACATCAGAAATGATAAGAGTGTGCTCCTCTGGTGTGGT
TTCAGTTTGCAATGTCTCCATGTTCCAGATAACAACctggtaactgccgataaccaagagggag
gaatagcttgggtgaaaaacgcaagattggaacaaatttccactagaaacgagctcgtgaatgc
attctcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 624
Transcript exons: 8554277-8554474,8556821-8556943,8557052-8557204,8557332-
8557481
CTGGTAACTGCCGATAACCAAGAGGGAGGAATAGCTTGGGTGAAAAACGCAAGATTGGAACAAA
TTTCCACTAGAAACGAGCTCGTGAATGCATTCTCCTGAGGCGATCGACCATACTCTGACAGAAT
CCCGACTTACGGATGCCAAATAATCTCCATTCGTATCCCAACAAAGAGAATGGACATCTGATGC
GTGACCCTTTAATGAGAGTGTCGGCCTGTCCGACTCGAAATCAATTATAGAAACCACGCTATCT
GATGTTGCAGCCAGATACTGCCCTGTTCTTGGTTGAAATCTCACCTGCTTCGAGCCATTGCCAC
CCTTGGAGATGTGTGTAGAACCTTGACTGACGTGCCAGTAGCGAATCTCATTGTTTGCATCACA
AGAGCAGAAAATCTCACTCTTCTTAGGGTGGAAATCAAGAGATTGCACTTGGGAGGTATGTCCA
GTATACGCACGAAGACAATAATTTGGTTGTGCTGCATCCCAAAGTCGAATAGTTGCATCAAAGG
AAGATGTCGCTAGCTGAGTTGAATTGGGTTTGAAGCGAACATCAGAAATGATAAGAGTGTGCTC
CTCTGGTGTGGTTTCAGTTTGCAATGTCTCCATGTTCCAGATAACAAC

Genomic sequence CTGGTAACTGCCGATAACCAAGAGGGAGGAATAGCTTGGGTGAAAAACGCAAGATTGGAACAAA
TTTCCACTAGAAACGAGCTCGTGAATGCATTCTCCTGAGGCGATCGACCATACTCTGACAGAAT
CCCGACTTACGGATGCCAAATAATCTCCATTCGTATCCCAACAAAGAGAATGGACATCTGATGC
GTGACCCTAAAAAGTGAACATTATTCTCTCATCAGCCACTTGTATTGAATACTGCAGAAGTGAA
ATGAAAAGAAGCTCCCTAACTCATCCAACTAATATTTACTAGCCAAGTGAACTCCCAAGATCTC
CCAACTCCTCGAGAAAGTCTCCTACTTCTTATACATTTTTTTTTCTCCCTAACAGGATTGCTTC
CTCCATCGAGAAACGTGTGAGGGAGGGACCTTCTATGGGGTAACCATTCAAAGCTATAGGAGGT
ACCCACTCGGTTACTTGAAAAAAAAAATGTTCTAGGGAACTTAGTAATAAGAGTATAGCCTTCC
ACTGAAACCAACGTGATGCTTGGACTTCTCAACGACTATTGCCCACCTCCACCACTAGGCATCT
AAAAGAAAACATACTCCATTGTTGGAGACGAGGTCAACTGACTAAGTACAAACTTATAAGTCTC
ATAACTATAGTTTGACTACACTTTGTACTAGTTGACAATTCTGCAATTCCTAATACATAAGGTA
CGTTTATCATCCATTATTTTAATATTTACCTAGCACAAAGAATTAAATTGAAAAATGTCAAAAC
ATATGAGATTAAATTGAAAAGTGTTAAGTAAAAGAGAAAATATTGAAAGAAGGAAAAAAAATCA
AAACATTAGAGACTAAAACAGTCTCCAAAATGCATTAGCCTAACACTTTTTCTGAGTTGTAATA
GCCACGATCAATGTAATCTTAGGCTTGGATGCTACCATCCTTTTGAATCAAAACCTAAATATTT
TGACCGACCAACCTAAAAAATTGTGCCCAAATAAGGTCTGACCAGAGCTAGAAAATCTTTTTTA
TTCTTTACTCCAGCTGCATATTACCTCTCTTGATCTCGGTCTCTATGTTCGCTCTCACTCTAGC
TCCCAATTTTCCATCTCACTCTCACTCCTTATCACAGGTCAAAAGTCAAAATTGGAAAAGAAGT
GAAGACAAGGGATAAAATTGGGAGCGAGAGAGAGCAATGGAACGAGAACGAAAGAGGAACGTAA
GGAGCGAGAAGGAGAGGGAGAGGGAAAGTGGGGACCAAGAGCGAGAAACTACATAGAGCAAGAG
CAAGAGGAAAATAGGGAGCAAGAGCGTAAAATATAGAACTTATTATGAAAAATCAGGTCAGCTT
TTCGGATCAATTTTTTAGAGTTCCACATGGAAAAAAATCCCCTATAAGTTCCTATGAGAATGCA
TAAACTCTTATTATACATGCTTTGATCATTATACCTTGACAACTTTTCTATAAACAAGGAAACA
TGCAAAAATATCATATTATTAATCCTTAAAAACTTGTAAGCAACAATTTTCTTTTATAATAAGA
AAAGACGATATCATAACACGAAAGAGAATAAGAAACAAAAAAGAAACTGAAAGAAGAAAACAGC
ATCAGATTTTGTATTCATATAATTTTTATCAAATTCATTTCTAAAGAATGAGAAATCAATACTA
TAAAATTTTGAGATTATGACTCTCGTGGATAAGAATCAAATAAATGACAAGAAATAACTTCGGT
CTGAAAAATAAACCAATTAACCTTACACGGGTGTGTTGGTTGTTCAGAAAAATTGAAAAATAAA
AAGATGAACAAAACCACATACAATCTTAATCTATAATTTTAAGGGGGATAATAACAATCTGAAT
TTCAAATTAATAATTGTATTAATTTAAGCTCTAAACTTTTATAAGTGAATTAATTTAGACCCTT
CGTCACTTGACGTAGTAACAATTTTCACTTGATTCCTTTTAGGATCATCTAAAAACCACCTAAT
AATTTTAGTCTCCTCCCAAAATTCGGCTTAATTACCCAAAACAAAAAAAAAAATTGTGAATAAA
TTCTTAATAAGGAAAGAAAAACAAAGAACAAGAAGATACAAAAATCACTTATATTAATTAAAAA
AAAGAAAGGAAAAAAAAACCACTACTATCCATTTGAATCAAGCAAGTTTTTAAAACGAAGACCT
AGCATAAGGTCTACATTTATTCACTAATAGAAGTTTAGAGTTATAGTTGATACAATAATTTTAT
TACGTCGAAGTTTTAAGTGATTCTACCCAACTTTAAGCATTTACATTGAGTTTTTATTTGAAAT
ATTAGTTTTTTCACAATTCCACAATTTTGCTACTAAGCTAGTTTGAAGAGAACTCAATAAATAT
TAAATCCTACATGTTTCTACAAAGGTTGAAATTAAAATCTTATTTTTCAAACTAAAAATGTGTC
TGTCATTAAAAATGAATAAATATGTCAAACATAATTAAGAATTTCAATGATGGGAAAAAGAACA
CTGCATCATGAAATTTACTTTTTTCTTTCATTCTACTTTTTTTCTTACCTTTAATGAGAGTGTC
GGCCTGTCCGACTCGAAATCAATTATAGAAACCACGCTATCTGATGTTGCAGCCAGATACTGCC
CTGTTCTTGGTTGAAATCTCACCTGCTTCGAGCCATTGCCACCCTGGTACACAAACTTGCATTT
AGACTAGAAATTTAACCACTAACAAAAAAATGTGATACATTGGGAAATTGAAAGAACGAAATAA
ATCAAAGGAATCATTGAACTAGCCTTGGAGATGTGTGTAGAACCTTGACTGACGTGCCAGTAGC
GAATCTCATTGTTTGCATCACAAGAGCAGAAAATCTCACTCTTCTTAGGGTGGAAATCAAGAGA
TTGCACTTGGGAGGTATGTCCAGTATACGCACGAAGACAATAATTTGGCTGGGAGAATAGATCT
CACATGGTCATTTATGACAAACAAGAAAGAGGGACTGAAAGATAGATCAATTCAAATAACATAT
CACAAAAATTAGATTTTGTGGAAGTGAAGTTAACAGAATAAACCTACTTGTGCTGCATCCCAAA
GTCGAATAGTTGCATCAAAGGAAGATGTCGCTAGCTGAGTTGAATTGGGTTTGAAGCGAACATC
AGAAATGATAAGAGTGTGCTCCTCTGGTGTGGTTTCAGTTTGCAATGTCTCCATGTTCCAGATA
ACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.972209082
Functional Information
Coding potential Y
Potential coding position 8557468-8554279(-)
Potential amino acid sequence METLQTETTPEEHTLIISDVRFKPNSTQLATSSFDATIRLWDAAQPNYCLRAYTGHTSQVQSLD
FHPKKSEIFCSCDANNEIRYWHVSQGSTHISKGGNGSKQVRFQPRTGQYLAATSDSVVSIIDFE
SDRPTLSLKGHASDVHSLCWDTNGDYLASVSRDSVRVWSIASGECIHELVSSGNLFQSCVFHPS
YSSLLVIGSYQVVIWNMETLQTETTPEEHTLIISDVRFKPNSTQLATSSFDATIRLWDAAQPNY
CLRAYTGHTSQVQSLDFHPKKSEIFCSCDANNEIRYWHVSQGSTHISKGGNGSKQVRFQPRTGQ
YLAATSDSVVSIIDFESDRPTLSLKGHASDVHSLCWDTNGDYLASVSRDSVRVWSIASGECIHE
LVSSGNLFQSCVFHPSYSSLLVIGSYQVVIWNMETLQTETTPEEHTLIISDVRFKPNSTQLATS
SFDATIRLWDAAQPNYCLRAYTGHTSQVQSLDFHPKKSEIFCSCDANNEIRYWHVSQGSTHISK
GGNGSKQVRFQPRTGQYLAATSDSVVSIIDFESDRPTLSLKGHASDVHSLCWDTNGDYLASVSR
DSVRVWSIASGECIHELVSSGNLFQSCVFHPSYSSLLVIGSYQVVIWNMETLQTETTPEEHTLI
ISDVRFKPNSTQLATSSFDATIRLWDAAQPNYCLRAYTGHTSQVQSLDFHPKKSEIFCSCDANN
EIRYWHVSQGSTHISKGGNGSKQVRFQPRTGQYLAATSDSVVSIIDFESDRPTLSLKGHASDVH
SLCWDTNGDYLASVSRDSVRVWSIASGECIHELVSSGNLFQSCVFHPSYSSLLVIGSYQ
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019