Plant Circular RNA Database

Detail information of CSA028048_g_circ2

			
						 General Information
					
						CircRNA Name
						CSA028048_g_circ2
					
						ID in PlantcircBase
						csi_circ_001518
					
						Alias
						Cs-circRNA745
					
						Organism
						
							Camellia sinensis						
					
						Position
						
							chrSc0001693: 61288-63842  JBrowse»						
					
						Reference genome
						
							v1						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI2
					
						Parent gene
						
							CSA028048						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							CSA028048_g_circ3 						
					
						Support reads
						NA
					
						Tissues
						bud
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						CSA028048.1:5

General Information
CircRNA Name	CSA028048_g_circ2
ID in PlantcircBase	csi_circ_001518
Alias	Cs-circRNA745
Organism	Camellia sinensis
Position	chrSc0001693: 61288-63842 JBrowse»
Reference genome	v1
Type	e-circRNA
Identification method	CIRCexplorer, CIRI2
Parent gene	CSA028048
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	CSA028048_g_circ3
Support reads	NA
Tissues	bud
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	CSA028048.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAGGTTATAATCACAGTGGAAGAAGGATCGGTTGGGGGGTTCGGGTCACATGTTGCTCACTTC
ATGTCCCTAGATGGGCTTCTTGATGGCACAGTCAAGggatggctgtgggaagggacttaaaagg
aagaaagaaccgtgtagttgctgttataggtgatggtgccatgacagcaggtcaagcttatgaa
gccatgaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGATGGCTGTGGGAAGGGACTTAAAAGGAAGAAAGAACCGTGTAGTTGCTGTTATAGGTGATGG
TGCCATGACAGCAGGTCAAGCTTATGAAGCCATGAACAACGCAGGGTACCTTGATTCAGACATG
ATTGTCATTCTTAACGACAACAAACAAGTCTCTTTACCCACTGCTACTCTAGATGGGCCTATAC
CACCTGTTGGAGCTTTGAGCAGTGCTCTAAGTCGGTTACAATCAAACAAGCCTCTCAGAGAATT
AAGAGAAGTTGCAAAGGTTAGTAATACATCACTGGAGTGATAATGGAGACACGCTTCGATCCTA
ATGATGCTTTCACTGAACTTGTTTCTATTGTATTGAGATTGTTGCAGGGAGTGACTAAACAAAT
TGGTGGGCCGATGCATGAACTTGCTGCGAAAGTTGATGAATATGCTCGGGGAATGATCAGTGGT
TCTAAATCAACGCTGTTCGAAGAACTTGGACTCTATTATATTGGTCCTGTTGATGGTCACAACA
TAGATGATCTTGTTTCAATTCTTAGAGAGGTTAAGAGCACTAAAACAACAGGTCCTGTCCTCAT
CCATGTTGTCACTGAGAAAGGCCGAGGATATCCATATGCTGAGAAAGCCGCAGACAAGTACCAT
GGTAAATTCAGAAATTACAAATTAAAAACAAATTTTTTGCTTAATTATGATTTGAGCACTGCAA
TTAATCATTTAAAACCAATTTTCATAATATTGTGGACAAATATGCTCATTTTAGATGTCATGGG
AGAGAAAATTAGTCGAAGTCGAATGCCAAAGAGACTATCTGATGGAGAACGAAAAGGAATTGGA
TGAAGATTAGGGAATAATTTTATTGTCTCATTAGCCTTGAATTATAGTAGTTTTATTTTGGAAA
CTTTTAATTATGATTTTCGTGGATGCCTTATAAATAGGCCATTATGTATTAAAGTTACTCAGAC
TTGAATATTGAATTGAGAATTTTGATATTCAGATTTAGGGTTTATTTTCTTTTCTTTGAATAGT
ACCGGGATTTTGTTTTTGCAGGAGTGGCCAAGTTTGATCCAGCAACAGGAAAACAATTCAAAGC
CAGTGCTAAAACGCAGTCATACACGACGTACTTTGCAGAGGCTTTGATTGCAGAAGCTGAGGCA
GACAAAGATATCGTTGCAATCCATGCTGCAATGGGTGGTGGAACAGGCTTGAACATATTCCACC
GCCGCTTCCCAACACGATGCTTTGATGTCGGAATAGCAGAACAGCATGCTGTAACTTTTGCTGC
AGGATTGGCCTGTGAAGGCATTAAACCCTTTTGTGCAATCTACTCATCTTTCATGCAAAGGGCT
TATGATCAGGCAAGCCAACTAAACCTTGTGTCCCAATCAAATTGGGTCGACTATATGAATCTTT
TTTCGTCATTCTGCCATGACTATATGAATTTTTTTTTGCTATTCTACAATGTCATGGAATATAT
GCTCAGTTAAATTAAGTAAATTCATATTTTTTTTACTACCACAACCTGTGGTCTTTCTCTCCCT
CTCACATTTCCATTTATGAGTCTTAATATTTCAACACTTTGTCTCGGTTTATTCCACAGGTAGT
GCATGATGTCGATTTACAAAAGTTGCCTGTGAGATTTGCAATGGACAGAGGTGGGCTGGTTGGA
GCAGATGGTCCAACACATTGTGGTGCTTTTGATGTCACTTTTATGGCATGCCTACCAAACATGG
TAGTGATGGCTCCTTCTGATGAGGCTGAACTGCTCCACATGGTTGCAACTGCTGCTGCCATAGA
TGACCGGCCAAGTTGTTTCCGCTACCCCAGGGGAAACGGCGTGGGCGTAGAGCTGGCACCAGGG
AACAAAGGCATTCCACTCGAGGTATGGCTCAACCAAGTTTCCACTTATGTTGGATCATAGATTT
GGGTAGGATTTGGAAAGGGAAAGGAAAAAGTGGGAGAAATGTAAATAAAATATAAGCTAAATTT
TTCCCCGTAGTTGAGGAAAACTAGTTGTTGTGATGTGTCTTGTATTTACTGTACACTCAAAATT
ACTACTGTAGGGGCCTTTTACAGAGGCGGAGGGCCAAGGTTCTGCCTCTTCGCTGTGGAAGTAG
GCACACCCCGCCAAACAGCGTATATCTTGTATTCTTGTTTTTATGTGTGTGCTTTTACTGCTTT
ATTGCATGATTGGAACCATGATTCTGCACTTCACTACTACAGATTTGAAAAAAAAAAAACAAGT
TTTATAGATGGTTGGACCTTTTTGCGACAGGTTGGGAAAGGCCGGATATTGATTGAAGGGGAGA
GAGTCGCACTACTGGGATATGGAACAGCAGTTCAAAGCTGTTTGGCTGCAGGAGCTTTGATAGA
ACATCATGGTTTGCGGTTAACAGTTGCAGATGCACGCTTTTGCAAACCATTGGATCATGCTCTT
ATTCGCAGCCTAGCAAAGTCACATGAGGTTATAATCACAGTGGAAGAAGGATCGGTTGGGGGGT
TCGGGTCACATGTTGCTCACTTCATGTCCCTAGATGGGCTTCTTGATGGCACAGTCAAG
						
					

			
		

Sequences
Splice junction sequence	TGAGGTTATAATCACAGTGGAAGAAGGATCGGTTGGGGGGTTCGGGTCACATGTTGCTCACTTC ATGTCCCTAGATGGGCTTCTTGATGGCACAGTCAAGggatggctgtgggaagggacttaaaagg aagaaagaaccgtgtagttgctgttataggtgatggtgccatgacagcaggtcaagcttatgaa gccatgaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGATGGCTGTGGGAAGGGACTTAAAAGGAAGAAAGAACCGTGTAGTTGCTGTTATAGGTGATGG TGCCATGACAGCAGGTCAAGCTTATGAAGCCATGAACAACGCAGGGTACCTTGATTCAGACATG ATTGTCATTCTTAACGACAACAAACAAGTCTCTTTACCCACTGCTACTCTAGATGGGCCTATAC CACCTGTTGGAGCTTTGAGCAGTGCTCTAAGTCGGTTACAATCAAACAAGCCTCTCAGAGAATT AAGAGAAGTTGCAAAGGTTAGTAATACATCACTGGAGTGATAATGGAGACACGCTTCGATCCTA ATGATGCTTTCACTGAACTTGTTTCTATTGTATTGAGATTGTTGCAGGGAGTGACTAAACAAAT TGGTGGGCCGATGCATGAACTTGCTGCGAAAGTTGATGAATATGCTCGGGGAATGATCAGTGGT TCTAAATCAACGCTGTTCGAAGAACTTGGACTCTATTATATTGGTCCTGTTGATGGTCACAACA TAGATGATCTTGTTTCAATTCTTAGAGAGGTTAAGAGCACTAAAACAACAGGTCCTGTCCTCAT CCATGTTGTCACTGAGAAAGGCCGAGGATATCCATATGCTGAGAAAGCCGCAGACAAGTACCAT GGTAAATTCAGAAATTACAAATTAAAAACAAATTTTTTGCTTAATTATGATTTGAGCACTGCAA TTAATCATTTAAAACCAATTTTCATAATATTGTGGACAAATATGCTCATTTTAGATGTCATGGG AGAGAAAATTAGTCGAAGTCGAATGCCAAAGAGACTATCTGATGGAGAACGAAAAGGAATTGGA TGAAGATTAGGGAATAATTTTATTGTCTCATTAGCCTTGAATTATAGTAGTTTTATTTTGGAAA CTTTTAATTATGATTTTCGTGGATGCCTTATAAATAGGCCATTATGTATTAAAGTTACTCAGAC TTGAATATTGAATTGAGAATTTTGATATTCAGATTTAGGGTTTATTTTCTTTTCTTTGAATAGT ACCGGGATTTTGTTTTTGCAGGAGTGGCCAAGTTTGATCCAGCAACAGGAAAACAATTCAAAGC CAGTGCTAAAACGCAGTCATACACGACGTACTTTGCAGAGGCTTTGATTGCAGAAGCTGAGGCA GACAAAGATATCGTTGCAATCCATGCTGCAATGGGTGGTGGAACAGGCTTGAACATATTCCACC GCCGCTTCCCAACACGATGCTTTGATGTCGGAATAGCAGAACAGCATGCTGTAACTTTTGCTGC AGGATTGGCCTGTGAAGGCATTAAACCCTTTTGTGCAATCTACTCATCTTTCATGCAAAGGGCT TATGATCAGGCAAGCCAACTAAACCTTGTGTCCCAATCAAATTGGGTCGACTATATGAATCTTT TTTCGTCATTCTGCCATGACTATATGAATTTTTTTTTGCTATTCTACAATGTCATGGAATATAT GCTCAGTTAAATTAAGTAAATTCATATTTTTTTTACTACCACAACCTGTGGTCTTTCTCTCCCT CTCACATTTCCATTTATGAGTCTTAATATTTCAACACTTTGTCTCGGTTTATTCCACAGGTAGT GCATGATGTCGATTTACAAAAGTTGCCTGTGAGATTTGCAATGGACAGAGGTGGGCTGGTTGGA GCAGATGGTCCAACACATTGTGGTGCTTTTGATGTCACTTTTATGGCATGCCTACCAAACATGG TAGTGATGGCTCCTTCTGATGAGGCTGAACTGCTCCACATGGTTGCAACTGCTGCTGCCATAGA TGACCGGCCAAGTTGTTTCCGCTACCCCAGGGGAAACGGCGTGGGCGTAGAGCTGGCACCAGGG AACAAAGGCATTCCACTCGAGGTATGGCTCAACCAAGTTTCCACTTATGTTGGATCATAGATTT GGGTAGGATTTGGAAAGGGAAAGGAAAAAGTGGGAGAAATGTAAATAAAATATAAGCTAAATTT TTCCCCGTAGTTGAGGAAAACTAGTTGTTGTGATGTGTCTTGTATTTACTGTACACTCAAAATT ACTACTGTAGGGGCCTTTTACAGAGGCGGAGGGCCAAGGTTCTGCCTCTTCGCTGTGGAAGTAG GCACACCCCGCCAAACAGCGTATATCTTGTATTCTTGTTTTTATGTGTGTGCTTTTACTGCTTT ATTGCATGATTGGAACCATGATTCTGCACTTCACTACTACAGATTTGAAAAAAAAAAAACAAGT TTTATAGATGGTTGGACCTTTTTGCGACAGGTTGGGAAAGGCCGGATATTGATTGAAGGGGAGA GAGTCGCACTACTGGGATATGGAACAGCAGTTCAAAGCTGTTTGGCTGCAGGAGCTTTGATAGA ACATCATGGTTTGCGGTTAACAGTTGCAGATGCACGCTTTTGCAAACCATTGGATCATGCTCTT ATTCGCAGCCTAGCAAAGTCACATGAGGTTATAATCACAGTGGAAGAAGGATCGGTTGGGGGGT TCGGGTCACATGTTGCTCACTTCATGTCCCTAGATGGGCTTCTTGATGGCACAGTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							61359-63840(-)
63818-61345(+)
61291-61308(+)
						
						Potential amino acid sequence
						
							MAPSPITATTRFFLPFKSLPTAIP*(-)
MGFLMAQSRDGCGKGLKRKKEPCSCCYR*(+)
MAVGRDLKGRKNRVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP
PVGALSSALSRLQSNKPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSKSTLFEELGL
YYIGPVDGHNIDDLVSILREVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK
QFKASAKTQSYTTYFAEALIAEAEADKDIVAIHAAMGGGTGLNIFHRRFPTRCFDVGIAEQHAV
VHDVDLQKLPVRFAMDRGGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELLHMVATAAAI
DDRPSCFRYPRGNGVGVELAPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAGALIEHH
GLRLTVADARFCKPLDHALIRSLAKSHEVIITVEEGSVGGFGSHVAHFMSLDGLLDGTVKGWLW
EGT*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	61359-63840(-) 63818-61345(+) 61291-61308(+)
Potential amino acid sequence	MAPSPITATTRFFLPFKSLPTAIP(-) MGFLMAQSRDGCGKGLKRKKEPCSCCYR(+) MAVGRDLKGRKNRVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP PVGALSSALSRLQSNKPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSKSTLFEELGL YYIGPVDGHNIDDLVSILREVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK QFKASAKTQSYTTYFAEALIAEAEADKDIVAIHAAMGGGTGLNIFHRRFPTRCFDVGIAEQHAV VHDVDLQKLPVRFAMDRGGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELLHMVATAAAI DDRPSCFRYPRGNGVGVELAPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAGALIEHH GLRLTVADARFCKPLDHALIRSLAKSHEVIITVEEGSVGGFGSHVAHFMSLDGLLDGTVKGWLW EGT*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tong et al., 2018

circRNA

Detail information of CSA028048_g_circ2

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