Detail information of BGIOSGA015356_circ_igg.1


General Information
CircRNA Name BGIOSGA015356_circ_igg.1
ID in PlantcircBase osi_circ_014225
Alias Chr04:13853043_13855311(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12229745-12232013  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGACTTTTCCCAAGGAGATCATCTGCAGCAACTCTGTTTTGTAACTTCTCTGCTTGCATTG
TTGCATCTGAGAAACTTCGGCAAATCAGGCCTTTAAccttaaccatgccacgaaatcaacagac
caaaaatcaaaacaaacatgtacaccatcaaccgtgtcaccgttgatgccaaaatatgcctgtc
ctgcaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAACCATGCCACGAAATCAACAGACCAAAAATCAAAACAAACATGTACACCATCAACCGTG
TCACCGTTGATGCCAAAATATGCCTGTCCTGCAAAAATATAGCACAAGTCAAGTACAGAATCTT
GCAAATTTGGAATTTCATGCGTGAACTTCGAAAGACCAAAAGTGGAAGAACAGAAAGTAGCTCT
GGTGGCTTCACACTGTGTGGGGGCAATGAACTTGTTATATTGCTTACAAACATTTCTTTAACCA
AACTATATCATGCTTAAGATCTGTACCACCCAAACTGAACATGTTTTATCCTATCTAAAGCTAC
CCATGACCTTTTGTTCATAGGTTATTTTTTTTTAGTTTGTTCAGTAAGAATTTTGTCTTATTGT
ATTTGGACTCCATAGACACGTCTGCCCAGAATAAACTCGAGGACAAAGCTTAAGTAATTCAAGA
GCAGATTTGCATCCAGACATTCCCAGGCCACAATTGCTGTTTTTGGTTTAGACAAATGGAGCTT
ACTGATGGGGCTCAAGCGTTTTTCTGATAAGTAATGCTTTAATTCAACAAAATTGATTTGTTTC
AGGTGCTTCAATACATGAGTATGTACAAAGAACACAAAAAAGAAATGATAAGGAAGTACAGATG
AATTAGGGCAGTAGGAGGCTGTTGAAAACCCATGCAGCTTGGCCTAATTAGGCATGTATTATAT
GGAATTGTACAAGAAACTGTTGTGTATAGTACCAAGGGAGACATCACTAAATAGTTTGTGCTTT
TTGTGTAAATTGAACCCAGTGTAAACTGGCCTCTTTGGTCCAGTGTGAGTGAATACTAATCGTC
AAAATAAATCTGAGCTATGAGAATCCTTATTGTCGGCTGAGCGAATGTAGATTTATTCAAATAG
CTCCTGGGGATTGTCTAACCTTATTCAAAGAGTTTATATTTCATTTTACAAATCTATTGCTTTT
GGTACTACAGTTTTGCATCCGCATACATTTTAAGTCTATTTTATTCTTATAGTTATTTTTTGCG
ACCTTTTTCCATCACATACAGTTAGAGAAATATCTATAAAACTCTATTCTCATTGTTTTATGTT
TAGACAGCACATTCTCATTCAATTAAATATAATATTTCTTAAAACATAAACATATGCCCATATC
CGATGCACTACACGCAAGGGACTATATATACACACAGATGTGTGCAAGTGCTAATTCTTATTTT
CTTTCTTTCACGGTACACAACTATCTAATAGTTAACACATTGTGTGGAAAAATGGGTACCAAAA
AGGAACGATTTCACAAGGCAATTTGTTCCAGCAGTTGTTTATGTGGTTAAATTTCATTCTCCAA
TTTTATCATTAATTTTCAGACATCATTTATTTATTGGAAGATGGAAGGCATGCATGTCTCTTAA
TTCATTGTCCACCAAATTAAGATCTAATGTGGAAATGAGCAAGCATGCATGAGTGATGGGTTAC
TACTATTTGCAACACACCAATATTATCTTACCAAACACTACATGCAAGGGACTATACTAATTAC
TCTCTTATCCCAGACATGAATGCATACGTCCATGCATGAGTGAGTTATGTTTGTGTTGGGCTCA
CCAAGATATGAAATGCGATTACACATTCCACTCACATTAATTCCTTGCTCGGATTAGCCTTTGA
TAGAATGCATGTTCCACAAAATCAAAGCATGAAGATTTTCCTTTTAAACAATCCAAGCTATTTG
TTACATCTTTTAGGTAGATTGGATGCTCACGATGTTTTCCTTTTCATTGATTAACATGGGAATT
TCCATATATTTTATTTTCTGATTAATGTGCAAATTTATAGTTTTTAAACCTCCTAAGAGTTAAG
CTGGGGGGACTTATAATGTAGGCCCCATGATCCTGTGCTTCTTTGGCAATATGTCATTTTAAAT
CTGAAGTAAGATACATCTGTTACAAAAGAGGAAAAAAAATCAAAGTACGTAACAGGAAAACTAT
AATTAGCACTGACCTAGCTTTTCTTCAAATTTCTAGGGGAAGCACAATGCAGCTGTCGCCCTGC
TTCTGCAGCAACCTTGATTTCCTGAAGTTGGTTAGCTATGTCCTCTAAGAGTTGCAGCTGTAAT
GATTGCTTTCTTTCACTTGCTGCATGCTTTATCTTGTCTTGTGCACCTTTAATGGCATTCAGAC
TTTTCCCAAGGAGATCATCTGCAGCAACTCTGTTTTGTAACTTCTCTGCTTGCATTGTTGCATC
TGAGAAACTTCGGCAAATCAGGCCTTTAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021