Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA023441_circ_g.3 |
ID in PlantcircBase | osi_circ_006902 |
Alias | 6:29467014|29471124 |
Organism | Oryza sativa ssp. indica |
Position | chr6: 29467014-29471124 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA023441 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA023441_circ_g.1 BGIOSGA023441_circ_g.2 BGIOSGA023441_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA023441-TA:15 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29467059-29471033(-) 29467132-29467017(+) 29471110-29467096(+) |
Potential amino acid sequence |
MHLYSLGDALKYFKTSDQIHLLLHLDQPNSQEERVAIYPCVWETL*(-) MYTMENHNSVLGIREYALSKGATVLAVDVEEGADLAKDNGSYSLYKISRRTNQRRSKDVLSHNC QNGSLSDISGNNWNIFAFPSECNFSGQKFSLSLVKLIKEGKIPLQQQGKWMVLIDAAKGCATEP PNLTVYPADFVVCSFYKIFGYPTGLGALIVKNEAANLLNKTYFSGGTVAASIADIDFVQKRKNI EQVLEDGTISFLNIASLRHGFKIIEMLTTSAIERHTTSLATYVRNKMLDLKHSNEINVCTIYGQ QYSKVEGLKMGPTITFNLKREDGSWFGYREVEKLASLFGIHLRTGCFCNPGACAKYLGLSHSDL VSNFEAGHVCWDDNDIINGKPTGAVRISFGYMSTFEDAEKFLKFLQSSFVSLPVQFNNGYMLNL NSLNLIDNSSQKAVSDIHLKSIIIYPVKSCQGFSVKSWPLTTGGLMYDREWLLQGSGGEILTQK KVPELGSIRTLIDLELGKLFIESPTRRDKLQLSLLESLADLSEEVDVFGQRF*(+) MYLVRGFKILQCISQRIQVHIYLWGNSSSETCW*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |