Detail information of Os01g0908500_circ_g.6


General Information
CircRNA Name Os01g0908500_circ_g.6
ID in PlantcircBase osa_circ_005365
Alias Os_ciR6364
Organism Oryza sativa
Position chr1: 39554816-39554967  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0908500
Parent gene annotation Mg2+ transporter protein, CorA-like domain containing protein. (
Os01t0908500-01);Similar to Magnesium transporter MRS2-F. (Os01t
0908500-02)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0908500-02:1
Os01t0908500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGGTTGACGACGATGGCGCGCTCGCGACCCAGGATCGTGGAAGGGTACGACAGCAGCGGGTC
CAGCACCCGCAGacaaagctcgcgaaggcggggtccttggagttcgggagcagcacctcggcgg
cggtgatcacggccttgacgcgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAAAGCTCGCGAAGGCGGGGTCCTTGGAGTTCGGGAGCAGCACCTCGGCGGCGGTGATCACGG
CCTTGACGCGCTCCAGGTTGACGACGATGGCGCGCTCGCGACCCAGGATCGTGGAAGGGTACGA
CAGCAGCGGGTCCAGCACCCGCAG
Conservation Information
Conserved circRNAs osi_circ_002599*
PMCS 0.409258772
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015