Plant Circular RNA Database

Detail information of Zm00001d026144_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d026144_circ_g.1
					
						ID in PlantcircBase
						zma_circ_010347
					
						Alias
						Zm10circ00066
					
						Organism
						
							Zea mays						
					
						Position
						
							chr10: 139668414-139671623  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d026144						
					
						Parent gene annotation
						
							Acyl-CoA thioesterase family protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d026144_T001:2
Zm00001d026144_T003:7
Zm00001d026144_T002:3
Zm00001d026144_T004:4

General Information
CircRNA Name	Zm00001d026144_circ_g.1
ID in PlantcircBase	zma_circ_010347
Alias	Zm10circ00066
Organism	Zea mays
Position	chr10: 139668414-139671623 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d026144
Parent gene annotation	Acyl-CoA thioesterase family protein
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d026144_T001:2 Zm00001d026144_T003:7 Zm00001d026144_T002:3 Zm00001d026144_T004:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGACATGAAATGTCTTACCATAACCAAAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATT
TGCTTCTTCTGCATTCGCAGGTGCAGAAACTTCAGCcttggtttatgttgagacgctgaacctt
cacaaaatctcatttctatgggccaaggaataaacttttttttagctgccaagttcctatattg
gctgcaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1113
Transcript exons: 139668414-139668995,139669600-139669712,139670065-139670
152,139670752-139670829,139671104-139671226,139671365-13
9671411,139671542-139671623
CTTGGTTTATGTTGAGACGCTGAACCTTCACAAAATCTCATTTCTATGGGCCAAGGAATAAACT
TTTTTTTAGCTGCCAAGTTCCTATATTGGCTGCAGATGAATAAACATTCAATCGGCTACCGAAC
GATAGAGATGAACAATATTAGTCTTTTCTTAAAAATAATATTTGATATTACAAATGTGCTATCC
TGCCTATCCAACTTGTTGCATCAATGGCAAGGTAGATCCATTTGAAAAATAATGCTTTTCAATG
ACACAATTGAAGTAAATCCTGAAGGCTATGGTTTGATGGTTAAACCGATTAATAGTCTGATAAC
ATCATTAATTTAGTAACCATTGAACTATGCGATAGGAAGTCAGAAAAAAATTACGATGGGAAGC
GTGGATCAGTAAGCCGTCTTTCACGTATCTCCTCCAGATTAAGGAGCTGCATTTGATTGCTTAT
TAGATATCTGTTTTTGACTTTTTTCTTCCACAGAGGCACAGATATCAAAGGAAAGAGAGAAAAA
TCCTTGCCTGTTCTGGCGGAGGAACATCAGGCATGATTGCAGCCTGATGCTCAAAACCCACTTC
TTCCTTCTGGAAAGAAGCAATCAAGGTGAATACAACTAGGCCCTTCTGCTTTGCCTCCACTTTT
CTTGTGGCAAAGCTGGATCCATCACGTGCCCGATGAACTTGATATATTATCGGTATGTTATTGT
CTCCAGCAACAAGAAAAATTGCATGCAAACTATGCACCATTTTTAGACAATCAACAGTCTTGGA
TGCTGCTGCTAGTGCCTGTCCAATGAATTGTCCTCCAAAAACTTGCCTAAAAGTTGGAGCTTCC
GGCAAAGTAAACCCACGGAAAATATCGACCTCTAGTGGTTCTAAGTGCAAAATTTGTTCCAGCA
AAGAATGTTCAGGTGTTTCCTCTGCATTCCATATTGTTTTTGGTTGTAACAAATGTCCATATTG
ATTGGGCAATATGAAGCAGGTCAGCTTTGATAGTGCAACAACATTGACTTGATGAACAGAACTA
TTAGTTCCATAACCAAAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATTTGCTTCTTCTG
CATTCGCAGGTGCAGAAACTTCAGC
						
					

						Genomic sequence
						
							CTTGGTTTATGTTGAGACGCTGAACCTTCACAAAATCTCATTTCTATGGGCCAAGGAATAAACT
TTTTTTTAGCTGCCAAGTTCCTATATTGGCTGCAGATGAATAAACATTCAATCGGCTACCGAAC
GATAGAGATGAACAATATTAGTCTTTTCTTAAAAATAATATTTGATATTACAAATGTGCTATCC
TGCCTATCCAACTTGTTGCATCAATGGCAAGGTAGATCCATTTGAAAAATAATGCTTTTCAATG
ACACAATTGAAGTAAATCCTGAAGGCTATGGTTTGATGGTTAAACCGATTAATAGTCTGATAAC
ATCATTAATTTAGTAACCATTGAACTATGCGATAGGAAGTCAGAAAAAAATTACGATGGGAAGC
GTGGATCAGTAAGCCGTCTTTCACGTATCTCCTCCAGATTAAGGAGCTGCATTTGATTGCTTAT
TAGATATCTGTTTTTGACTTTTTTCTTCCACAGAGGCACAGATATCAAAGGAAAGAGAGAAAAA
TCCTTGCCTGTTCTGGCGGAGGAACATCAGGCATGATTGCAGCCTGATGCTCAAAACCCACTTC
TTCCTTCTGCAAGAGAATCAGTTGAACAGATAGTCAGACCAAATTCACACTGAAATATTTCATG
AGGCTGACCTTTGCAGTCCTAAAAAATTTCAACCTAGCAGTAATGCAGTATATATTCTAGCAGT
TGTACTACAACAATTTATCCATGGATCATAAGCAACTGCACTAATCAAACTGAGACCAAGTCAC
CAAGAACAATATTGTCTGGTAGCTATTGAGACTAAGGATGATATCAATTGGTAGCTGATGAAGA
TATTTTATGGGTTCAATGAACATAAATTTTAGTGAGGTGGCAAGGGCTACAAGGAGCCATTTTA
TACAACAGTTCATGTTTCCATTTCAATTAATCTTAAGTTTGATAACAGTTTGGAACAGTACCAT
TTAATATAACCAAAGTAACAGTGACTTCATGCGGCGTTTTGGGAGATACAAGGTTCAAAATAGT
CATTGACCTTATAACTCAAAAATTGTCAGCATGAACAAGGCAGAGGCATTTTCAAGTTCAAAAG
ATTGAAAAATGAGAATCATAACTGGTACAGGTTTGTATAAATTATTTTAATCCGTCCAAAGAAA
TTTCAAATATTATCATTTATAGAAGTATAAGCACCTGGAAAGAAGCAATCAAGGTGAATACAAC
TAGGCCCTTCTGCTTTGCCTCCACTTTTCTTGTGGCAAAGCTGGATCCATCACGTGCCCGATGA
ACTTGATATATTATCGGTACTACACCAGAGGACAAATCAAAGACAGTCATGAGCATCACATTCT
TTTTTTGGATTAAAAGAAAGTGCACTAAGTATCCCAGGTTACTACAAAGCCAGAAAATGCTGTA
TGGGTAACTATCAGACTTTGTGGACCAGTTTCAGGAGTTAAAATACTGACTGTTGTGTAACAGA
ATCGTGATATTACATGAAACGAAAAAAGAATAAAAAATAGAGCCCCCCCAGCGAAGCCCAAACT
AAAAGCTTCTAGTGATACCGAGTCCTTATGAACGGATATATTACTGGTTCTCAGATTACATTTG
GTTGACCAAATTAACGTTGGCAAAAGATCATATAGCTTTAGGAAACCTTACTGTTATTGTCTCC
AGCAACAAGAAAAATTGCATGCAAACTATGCACCATTTTTAGACAATCAACAGTCTTGGATGCT
GCTGCTAGTGCCTGCATGGGATCAAACATAAGTGGTTACAACATACTGAAATCCTTTCACAAGG
GTCCCCAGCGTTTACTGAAAAAATCATAGAGTTAACAGTAGCATACAGAAATACATTTATCCAA
AAGATACCAACTGTCAGCAGCAAGGGAGTTGACATAACTAAACTCAAAAAACGGATTATTCATT
TATTCTGATTCAAACCTCCTACAGATACTCAAAAGACACCTAAGCAACGATTTCTTATAGCTTC
TTATTGTCACCATGTGCCCTGTGGCCCTTAGCAACATATCAAGTGAATAAATCAAGGAGATAGT
CATATCATAAACAAGACTGACAAGGACTAGAATTTTAAATATAATCTGTATATTTGTTCCTGAA
TAATTGGTTTCATGAGATGATCTTAAATCCAACCCACGTGCTTATGGGAAGTAGAGGAAGCATT
CTAGCATGTTTAAAAATGTTCCTTTTTAGCTATTGAAAATCAGTAATTTAACAATTTATACATG
AAAGTAAAATGATGAGTTAGAATTCAGTAGTAAAAGGAAGTGGTGAAATAGATATAGTTATCAG
ATCTAGAAAGTAAGCGAGGGTGGTTGAAAATTGCCTGTCCAATGAATTGTCCTCCAAAAACTTG
CCTAAAAGTTGGAGCTTCCGGCAAAGTAAACCCACGGAAAATATCGACCTAAAACACAGAAAAG
AATCATGGTGAGCATACCAAAAATATTACACTATTTATCATGTTTGTCCTTTTAACATTAATTC
AAGAAAATGCAACCATGCAAATCTCTTAAAGCCATGTCTGCTCTCATATTTATTTATTTTAAGT
GATGTAATTCAAAGTATACAAGCACAAGGTTATTCTTCAAATGGGAACAGTATGGTTCCATTGA
GAGTCTTAAATCCATTCGATGCACAATGAATAAAACATCATAGATACTGCCTTACATTATACTT
ACCTCTAGTGGTTCTAAGTGCAAAATTTGTTCCAGCAAAGAATGTTCAGGTGTTTCCTCTGCAT
TCCATATTGTTTTTGGTTGTAACAAATGTCCATATTGATTGGGCAATATGAAGCAGGTCAGCTG
TAATAGAACGGTCAACAATAAGCAAGAGATGATTATACGCATCTGGAAAAGCCATAAACCAAGT
GTTCACTAAGAAAAGAGAATCCTACAGCTAAAGAAATGATAAGTTAAAGTGGGACTGTTTGAAA
TAAGCACCTTTGATAGTGCAACAACATTGACTTGATGAACAGAACTATTAGTTCCTACAAAATA
ATGCAAAGCATCAGTAATTAAAGAAATGAAATCACATAAGACATCACTGTTTTATATCTTTTCA
TGCAGAATGAGTTTGAACATAATTAAACCAAATTATCATGACATGAAATGTCTTACCATAACCA
AAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATTTGCTTCTTCTGCATTCGCAGGTGCAG
AAACTTCAGC
						
					

			
		

Sequences
Splice junction sequence	TGACATGAAATGTCTTACCATAACCAAAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATT TGCTTCTTCTGCATTCGCAGGTGCAGAAACTTCAGCcttggtttatgttgagacgctgaacctt cacaaaatctcatttctatgggccaaggaataaacttttttttagctgccaagttcctatattg gctgcaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1113 Transcript exons: 139668414-139668995,139669600-139669712,139670065-139670 152,139670752-139670829,139671104-139671226,139671365-13 9671411,139671542-139671623 CTTGGTTTATGTTGAGACGCTGAACCTTCACAAAATCTCATTTCTATGGGCCAAGGAATAAACT TTTTTTTAGCTGCCAAGTTCCTATATTGGCTGCAGATGAATAAACATTCAATCGGCTACCGAAC GATAGAGATGAACAATATTAGTCTTTTCTTAAAAATAATATTTGATATTACAAATGTGCTATCC TGCCTATCCAACTTGTTGCATCAATGGCAAGGTAGATCCATTTGAAAAATAATGCTTTTCAATG ACACAATTGAAGTAAATCCTGAAGGCTATGGTTTGATGGTTAAACCGATTAATAGTCTGATAAC ATCATTAATTTAGTAACCATTGAACTATGCGATAGGAAGTCAGAAAAAAATTACGATGGGAAGC GTGGATCAGTAAGCCGTCTTTCACGTATCTCCTCCAGATTAAGGAGCTGCATTTGATTGCTTAT TAGATATCTGTTTTTGACTTTTTTCTTCCACAGAGGCACAGATATCAAAGGAAAGAGAGAAAAA TCCTTGCCTGTTCTGGCGGAGGAACATCAGGCATGATTGCAGCCTGATGCTCAAAACCCACTTC TTCCTTCTGGAAAGAAGCAATCAAGGTGAATACAACTAGGCCCTTCTGCTTTGCCTCCACTTTT CTTGTGGCAAAGCTGGATCCATCACGTGCCCGATGAACTTGATATATTATCGGTATGTTATTGT CTCCAGCAACAAGAAAAATTGCATGCAAACTATGCACCATTTTTAGACAATCAACAGTCTTGGA TGCTGCTGCTAGTGCCTGTCCAATGAATTGTCCTCCAAAAACTTGCCTAAAAGTTGGAGCTTCC GGCAAAGTAAACCCACGGAAAATATCGACCTCTAGTGGTTCTAAGTGCAAAATTTGTTCCAGCA AAGAATGTTCAGGTGTTTCCTCTGCATTCCATATTGTTTTTGGTTGTAACAAATGTCCATATTG ATTGGGCAATATGAAGCAGGTCAGCTTTGATAGTGCAACAACATTGACTTGATGAACAGAACTA TTAGTTCCATAACCAAAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATTTGCTTCTTCTG CATTCGCAGGTGCAGAAACTTCAGC
Genomic sequence	CTTGGTTTATGTTGAGACGCTGAACCTTCACAAAATCTCATTTCTATGGGCCAAGGAATAAACT TTTTTTTAGCTGCCAAGTTCCTATATTGGCTGCAGATGAATAAACATTCAATCGGCTACCGAAC GATAGAGATGAACAATATTAGTCTTTTCTTAAAAATAATATTTGATATTACAAATGTGCTATCC TGCCTATCCAACTTGTTGCATCAATGGCAAGGTAGATCCATTTGAAAAATAATGCTTTTCAATG ACACAATTGAAGTAAATCCTGAAGGCTATGGTTTGATGGTTAAACCGATTAATAGTCTGATAAC ATCATTAATTTAGTAACCATTGAACTATGCGATAGGAAGTCAGAAAAAAATTACGATGGGAAGC GTGGATCAGTAAGCCGTCTTTCACGTATCTCCTCCAGATTAAGGAGCTGCATTTGATTGCTTAT TAGATATCTGTTTTTGACTTTTTTCTTCCACAGAGGCACAGATATCAAAGGAAAGAGAGAAAAA TCCTTGCCTGTTCTGGCGGAGGAACATCAGGCATGATTGCAGCCTGATGCTCAAAACCCACTTC TTCCTTCTGCAAGAGAATCAGTTGAACAGATAGTCAGACCAAATTCACACTGAAATATTTCATG AGGCTGACCTTTGCAGTCCTAAAAAATTTCAACCTAGCAGTAATGCAGTATATATTCTAGCAGT TGTACTACAACAATTTATCCATGGATCATAAGCAACTGCACTAATCAAACTGAGACCAAGTCAC CAAGAACAATATTGTCTGGTAGCTATTGAGACTAAGGATGATATCAATTGGTAGCTGATGAAGA TATTTTATGGGTTCAATGAACATAAATTTTAGTGAGGTGGCAAGGGCTACAAGGAGCCATTTTA TACAACAGTTCATGTTTCCATTTCAATTAATCTTAAGTTTGATAACAGTTTGGAACAGTACCAT TTAATATAACCAAAGTAACAGTGACTTCATGCGGCGTTTTGGGAGATACAAGGTTCAAAATAGT CATTGACCTTATAACTCAAAAATTGTCAGCATGAACAAGGCAGAGGCATTTTCAAGTTCAAAAG ATTGAAAAATGAGAATCATAACTGGTACAGGTTTGTATAAATTATTTTAATCCGTCCAAAGAAA TTTCAAATATTATCATTTATAGAAGTATAAGCACCTGGAAAGAAGCAATCAAGGTGAATACAAC TAGGCCCTTCTGCTTTGCCTCCACTTTTCTTGTGGCAAAGCTGGATCCATCACGTGCCCGATGA ACTTGATATATTATCGGTACTACACCAGAGGACAAATCAAAGACAGTCATGAGCATCACATTCT TTTTTTGGATTAAAAGAAAGTGCACTAAGTATCCCAGGTTACTACAAAGCCAGAAAATGCTGTA TGGGTAACTATCAGACTTTGTGGACCAGTTTCAGGAGTTAAAATACTGACTGTTGTGTAACAGA ATCGTGATATTACATGAAACGAAAAAAGAATAAAAAATAGAGCCCCCCCAGCGAAGCCCAAACT AAAAGCTTCTAGTGATACCGAGTCCTTATGAACGGATATATTACTGGTTCTCAGATTACATTTG GTTGACCAAATTAACGTTGGCAAAAGATCATATAGCTTTAGGAAACCTTACTGTTATTGTCTCC AGCAACAAGAAAAATTGCATGCAAACTATGCACCATTTTTAGACAATCAACAGTCTTGGATGCT GCTGCTAGTGCCTGCATGGGATCAAACATAAGTGGTTACAACATACTGAAATCCTTTCACAAGG GTCCCCAGCGTTTACTGAAAAAATCATAGAGTTAACAGTAGCATACAGAAATACATTTATCCAA AAGATACCAACTGTCAGCAGCAAGGGAGTTGACATAACTAAACTCAAAAAACGGATTATTCATT TATTCTGATTCAAACCTCCTACAGATACTCAAAAGACACCTAAGCAACGATTTCTTATAGCTTC TTATTGTCACCATGTGCCCTGTGGCCCTTAGCAACATATCAAGTGAATAAATCAAGGAGATAGT CATATCATAAACAAGACTGACAAGGACTAGAATTTTAAATATAATCTGTATATTTGTTCCTGAA TAATTGGTTTCATGAGATGATCTTAAATCCAACCCACGTGCTTATGGGAAGTAGAGGAAGCATT CTAGCATGTTTAAAAATGTTCCTTTTTAGCTATTGAAAATCAGTAATTTAACAATTTATACATG AAAGTAAAATGATGAGTTAGAATTCAGTAGTAAAAGGAAGTGGTGAAATAGATATAGTTATCAG ATCTAGAAAGTAAGCGAGGGTGGTTGAAAATTGCCTGTCCAATGAATTGTCCTCCAAAAACTTG CCTAAAAGTTGGAGCTTCCGGCAAAGTAAACCCACGGAAAATATCGACCTAAAACACAGAAAAG AATCATGGTGAGCATACCAAAAATATTACACTATTTATCATGTTTGTCCTTTTAACATTAATTC AAGAAAATGCAACCATGCAAATCTCTTAAAGCCATGTCTGCTCTCATATTTATTTATTTTAAGT GATGTAATTCAAAGTATACAAGCACAAGGTTATTCTTCAAATGGGAACAGTATGGTTCCATTGA GAGTCTTAAATCCATTCGATGCACAATGAATAAAACATCATAGATACTGCCTTACATTATACTT ACCTCTAGTGGTTCTAAGTGCAAAATTTGTTCCAGCAAAGAATGTTCAGGTGTTTCCTCTGCAT TCCATATTGTTTTTGGTTGTAACAAATGTCCATATTGATTGGGCAATATGAAGCAGGTCAGCTG TAATAGAACGGTCAACAATAAGCAAGAGATGATTATACGCATCTGGAAAAGCCATAAACCAAGT GTTCACTAAGAAAAGAGAATCCTACAGCTAAAGAAATGATAAGTTAAAGTGGGACTGTTTGAAA TAAGCACCTTTGATAGTGCAACAACATTGACTTGATGAACAGAACTATTAGTTCCTACAAAATA ATGCAAAGCATCAGTAATTAAAGAAATGAAATCACATAAGACATCACTGTTTTATATCTTTTCA TGCAGAATGAGTTTGAACATAATTAAACCAAATTATCATGACATGAAATGTCTTACCATAACCA AAGTAGTCGTACTTATTTAACACATAGTCTGGGCGATTTGCTTCTTCTGCATTCGCAGGTGCAG AAACTTCAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.136168388

Conservation Information
Conserved circRNAs	NA
PMCS	0.136168388

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							139668456-139671568(-)
						
						Potential amino acid sequence
						
							MRFCEGSASQHKPRLKFLHLRMQKKQIAQTMC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	139668456-139671568(-)
Potential amino acid sequence	MRFCEGSASQHKPRLKFLHLRMQKKQIAQTMC*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020

circRNA

Detail information of Zm00001d026144_circ_g.1

Address

Any questions?

Supported by