Detail information of BGIOSGA033423_circ_g.1


General Information
CircRNA Name BGIOSGA033423_circ_g.1
ID in PlantcircBase osi_circ_008679
Alias Chr10:24148076_24148430(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20761167-20761521  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA033423
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033423-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGATCATTCACTCAGAATTTTCACAGTATCACACTCAGATGAAGCAACGGTGTGAAGACTAT
TTAAACTTCATTGGCAGTCTTCCAAGGGAACTTGAGgatctcatcatttagcgaaagtaaatcg
gatgataaacggttctacatcattaccccaaccaagacgcttcagctgaggactggctctgcta
aggaccgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTCATCATTTAGCGAAAGTAAATCGGATGATAAACGGTTCTACATCATTACCCCAACCAAG
ACGCTTCAGCTGAGGACTGGCTCTGCTAAGGACCGTGTGGCTTGGATTGAAGCACTTGTTTCTG
CGAGGAGTGAATATTCTCTTAACGGGGGTGTACCGTGTGACCAGAATGAGGGATCATTTTCCAC
TGAAAAGCTTAGGAATCGCTTGCATGCTGAAGGTGTTGGTGAGGCAACTATTAAAGACTGTGAA
CAGATCATTCACTCAGAATTTTCACAGTATCACACTCAGATGAAGCAACGGTGTGAAGACTATT
TAAACTTCATTGGCAGTCTTCCAAGGGAACTTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021