Detail information of BGIOSGA033141_circ_g.3


General Information
CircRNA Name BGIOSGA033141_circ_g.3
ID in PlantcircBase osi_circ_008525
Alias Chr10:20246142_20247217(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16867556-16868631  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033141
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033141_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033141-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGGCAAACAATACATTGATGCAAATGGTAGGTGCTGACTGGATAAAATCTGATAAGCGTGAA
GATGACCTTGCTGGCCGCCCTGGAGGACTAGTACAGgtgcaaaagagaggatatgttgacttac
aaggagctgctgatttcgataatggtccattttgctatggatatactcttccaaaagattcgaa
ctgtacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCAAAAGAGAGGATATGTTGACTTACAAGGAGCTGCTGATTTCGATAATGGTCCATTTTGCT
ATGGATATACTCTTCCAAAAGATTCGAACTGTACAATGCCTTCTACTTGGGCAATGACAGATCC
TACAACATTCTTAATCCGAGGGGAGTCATATTTGCAGGATCGTCTAAAGGTAGCTTTATAATGT
TTGGATTCTTAGACCAGTTCACTAGGCTAGGGTGCAAGGCTTTTGGTCTATAGGAAATAAGGAC
TGGCTTTCCTTCTTTGGGGGAAATAATTATGCTTCTGTTTTAAGTACCTCGTCATAATGAAGAA
CTATGAGCATTATTTTCTGATAATTCTTATGTTACTGACTAATATGATAGTACTGAGTGGCAGT
AGTGCAGGATTTGGAAAACAAAAAAATCCTCCCAAGAATTTCCTAAATTTGGCCAATTTGGATG
GCAATTTTATACTGTTATTGTTAGATCCACTGCTCGAGTCAAATGTATTAAAATAACTCAAACT
GAAACTTTAGTTACAACAGACCAACTGAAAATATTACCGGATTAGAGCTCCAATTTGGCAAATT
CTGTTTATTTTCTTTTGGGATTGTAAATTATTTAAGCAGACTCCAGCCATGTAGACTGGTTGAT
GCATATAAGGAAACTGGATTATTTCATGCTTTCCTAATAATAAAATCCACAATGGTCATGAAGT
AATTGTCTACAACTGTTACCTGATTTGGGTGTTATTCAAAATGAAGCACTAATTACCAGACGGA
GATTTTGAGACAATGTATCACTAGAGACAACTAATATAGCTACTATAAGAAACCTGCGATGCTA
TGATTTGGTCTATTTGCTCCCTCTATGTAAGTCTGGTAGGAGAACTTTCTAATCTGGCCAGCAC
AATAGTAGTCTATGTTGGAGAGGTTTTTCCCATTCGTAACTCTCTAATCCATTCAAATGTTTTC
TGTGATTTTTACAGATCAAGGCAAACAATACATTGATGCAAATGGTAGGTGCTGACTGGATAAA
ATCTGATAAGCGTGAAGATGACCTTGCTGGCCGCCCTGGAGGACTAGTACAG
Conservation Information
Conserved circRNAs osa_circ_007160
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021