Detail information of Os04g0509300_circ_g.7


General Information
CircRNA Name Os04g0509300_circ_g.7
ID in PlantcircBase osa_circ_024539
Alias NA
Organism Oryza sativa
Position chr4: 25483807-25485182  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0509300
Parent gene annotation Rnase III family protein, Shoot apical meristem (SAM) formation
and maintenance (Os04t0509300-01);Rnase III family protein, Tran
s-acting siRNA3 (ta-siRNA)(TAS3) biogenesis (Os04t0509300-02)
Parent gene strand -
Alternative splicing Os04g0509300_circ_g.8 Os04g0509300_circ_g.9 Os04g0509300_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0509300-02:4
Os04t0509300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGAAATCTTGCCATGAGCACCAGCAATATGTACCTTTGCATGAAGTAATTCCTCAAGACTGT
TGATACATTTCGTGTAGTTAAGTTTATTAGACCCACcatctgttttgttgcgactaagaataga
agttgctccgttcaggtagtgatgtgcgaagctggaagtactgccgttaagatcgacctccctt
ctatctag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTGTTTTGTTGCGACTAAGAATAGAAGTTGCTCCGTTCAGGTAGTGATGTGCGAAGCTGGA
AGTACTGCCGTTAAGATCGACCTCCCTTCTATCTAGCTTATCACCATCAAAGGACAAAAAGGTC
CTCGCAGCCTGTGCTACAATGAAACAAATAAGGGATAACTGATGTGCAGCCTACCTTAACTGAC
ATGCGACATCTGTCTGTTTAAAAGGGGCGAAACAGAATAGGATACTAAATTCAAGAATCACATG
AACGAGAACAAATATTATCTACGAAGAAATATCCAGAATGACCTTTCATCAATGTACACTTAGC
CTACAAAAAATGCCCAGCAATTTGAAGGCTTGGTAACCTAATCAGCATAATGACACTGACAGAA
AATAAGGAAAGGAAATCTTTTTTCACAAGCACATGCAACACAGACACAGATAGACACACATAGA
GATATTCATAGTGGGTCAATGATCCTAACTTTTCTCCTAAATTAAGTTAATCATCACATTTCAA
CAGGACATGTGATGCCAACCAAAATCGTACATGATGAAATAGTGGGGAGCCACTTCCACTTTAT
CATTAAACACATGTTTTCGCTGCTGCAGCCATAGTTTGCAACTTTGCAAGAAATTGAGTGATTC
GGGTTATACAGGGGTGTGTTGACGCAAAATTGTCTAGTGGTTTCATATCAACATGTTGCCAGGT
GCAAAAAAGCACTACAGCTTATTTAGGCAAAATGAGAGCAAGATCCAGGAAAGAAATATCCTCA
AAAACAAACAAACATTGAGCATCGAGCTAAGTAAACATGTAAGTTGCTCCCACATAGATTAAAC
TCACTTGCAGAGCTCCGAAAGAACCAAGTTCTTGCAAACAGAAAATAATATTTTCATGCAACCT
CCATAAGGACTTCAGTTTCTTCTGAGAATCCTTGAAATCGCATAGGCTCGCTCTTAGCATGCGC
TCGCTCTGTATTAAGCCCAATAAAAATAATGAGAAGGGAAAAAAGGAAACAGAACACATAAGGT
TTTGTCAATTGGAGTAATGACAATTTCAGCATAATGGTGGAACAAAACTTTACCTGAAGCTTTA
AGCTATCAAGCTCTTTGATGCATATTGTGGTAAGGTTAGAGTGATTAACTGGGCCATAAAAGTA
CACCTCCATATCAGGAGATGCAACCACACTTTCAAGTTCTTCATTATCAACTGAACAAACCTAT
CCAACATGAGAGTGAAAAGTTTTACAGAGAAGAATATCACTGAGTAATTTCCCCCAATCCCTAG
AAATCTTGCCATGAGCACCAGCAATATGTACCTTTGCATGAAGTAATTCCTCAAGACTGTTGAT
ACATTTCGTGTAGTTAAGTTTATTAGACCCAC
Conservation Information
Conserved circRNAs osi_circ_014563
PMCS 0.126595028
Functional Information
Coding potential Y
Potential coding position 25483811-25484894(-)
25484969-25483809(-)
Potential amino acid sequence MVGLINLTTRNVSTVLRNYFMQRFVQLIMKNLKVWLHLLIWRCTFMAQLITLTLPQYASKSLIA
*(-)
MEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHENIIFCLQEL
GSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKTDGGSNKLNYTKCI
NSLEELLHAKVCSVDNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASL
CDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHH
YLNGATSILSRNKTDGGSNKLNYTKCINSLEELLHAKVCSVDNEELESVVASPDMEVYFYGPVN
HSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAAR
TFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKTDGGSNKLNYTKCINSLEELLHAK
VCSVDNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKL
KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILS
RNKTD(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017