Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0509300_circ_g.7 |
ID in PlantcircBase | osa_circ_024539 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 25483807-25485182 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0509300 |
Parent gene annotation |
Rnase III family protein, Shoot apical meristem (SAM) formation and maintenance (Os04t0509300-01);Rnase III family protein, Tran s-acting siRNA3 (ta-siRNA)(TAS3) biogenesis (Os04t0509300-02) |
Parent gene strand | - |
Alternative splicing | Os04g0509300_circ_g.8 Os04g0509300_circ_g.9 Os04g0509300_circ_g.10 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0509300-02:4 Os04t0509300-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014563 |
PMCS | 0.126595028 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25483811-25484894(-) 25484969-25483809(-) |
Potential amino acid sequence |
MVGLINLTTRNVSTVLRNYFMQRFVQLIMKNLKVWLHLLIWRCTFMAQLITLTLPQYASKSLIA *(-) MEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHENIIFCLQEL GSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKTDGGSNKLNYTKCI NSLEELLHAKVCSVDNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASL CDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHH YLNGATSILSRNKTDGGSNKLNYTKCINSLEELLHAKVCSVDNEELESVVASPDMEVYFYGPVN HSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAAR TFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKTDGGSNKLNYTKCINSLEELLHAK VCSVDNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKL KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILS RNKTD(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |