Detail information of BGIOSGA032052_circ_g.1


General Information
CircRNA Name BGIOSGA032052_circ_g.1
ID in PlantcircBase osi_circ_008890
Alias Chr10:13243787_13247611(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9961971-9965823  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032052
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032052_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032052-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCCCACTCCAATGAGCCATCCCTGGAGGCACTGTGATCCAACCGATTCTGAGACCCTGGTGCT
GCATGCAAGTCCACAATGATACCTATGTTGTACTTCctctgcccatttaaatgcgttatccaag
gcttggagggatcctccaacaaatggagcaggaggattggggtcactggcgatccaccatccaa
ctgggatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCCCATTTAAATGCGTTATCCAAGGCTTGGAGGGATCCTCCAACAAATGGAGCAGGAGGA
TTGGGGTCACTGGCGATCCACCATCCAACTGGGATTCTCACTGCATTTAGCCCACTTGATGAGA
TGAATTTGAAGTCACTCTCAACTATGTATGTGCTCCAATGTTCCTGCAAATCATACAATTTCAG
AAAATGTGATAGGCATTGCTATGATTCTTCTTGACAAGATGTTTGCCAATTTCTACACAAGAAA
CATTAGTAACTTTTCTAAAGGGAAAATTATGTACTAGTAGTTATCAGAGAAGGATTTGTGATTA
TAATATGTATACAAAGAAATGCAATTGTTTCTTTTCAGGAATGCTTCTTCAGAGTCCGACTGTC
ATTTGTTGACCAATAACAATTTAGAGAGGGACAGTTCAGCACAGTGAGACTCACTGGCCTCTAG
TTTTATCAATGAATATAAGACAGGATATATAGGATATATTGCATCGACTCAAAAAATAAGTCAA
AAAAACAAAGGTTTAGCAACATGGCAGAAATTAACAAGCCAATTATCAAATCCATTCAAGCAAC
ATATGTAAATATTAGTGGAGGAAACTTTGTTCTTTTTTTAATGAAGCCAATATGAACCCTCTAA
GATGCTAACTACTGAAGGTAAAATGCTTAGGTTTTAAGGGCAACACAAATAATTGCACAATATT
GTAGTGTATTTGCCTCTTCTTCCTGCAGTTCTCAGGGAAAAAGTGTTTCTGCCATTATGCTTTA
TATCTACGTATACTCCAATAGTTAGAACATAGAAATTATGAAAGAACCTAACCTGATCGGCTTT
CTTTCTGCCAACAACCATTCTATAGTATAACAGTTCCAAACTTGTAGAATCAGTATACAGTTAG
TAGAAACCACAACCATCTTAATTTTTTAATAGCTATCATGAATGTTATAACCGTACATAGTAGG
CTAAGAATTTTTTTTCTGCATTGTCTTACACATTGCAGTGAGTTTTCTGCTATTCTCCATCAAA
TAATAGGTTAAAAATACAAGTGGAGGAAAAGTGGCCTAGATGTCTTACCCTAAGCACCTGCGAG
GCCTTCTCTGCACCATAGCCATTACAAATCTGATACTCCCCTTGTGGACCACCTACCATATCTA
CGATAAACACTGAGGGATCATCATTGCCCCAGTTTGTGCTTTCACCATAATCTGCTGTAACAGA
ATTGGCAGTCTTTGCCTAACATCAAGAAATAGAGAAGACTGATCATTTTGAGTCAAGGACGGAG
ATAGCTAGATAAACTACTTTCAATTCAAAATTAGTGAGTAAATTTAGAATGATCATAATTTAGA
AATGCCAAGTGAAGTATTTTTCATCTTAGAAATCTTTCTATTCATAAATTTTATTCAAATACAA
GCTTTCTGTTCAAGAGCACACAAGTAATTCTTCAAGAACCCAAGCTTATGAATCAACTCTATTT
TAGTCCAGGTACTAACCCACCAAGAACCTTTGGGGTAGTAGGGTTAATTCAGTCAGTCGAAGCA
TTACATGCCCTTGAACTCGGATTAAGCTAATCCACATAATATATTTTAAATCGACAAGTTAAAT
GCACTCACAAAGCAATTTTTGTAGGGAAAAACTGGGCTATAATCCACCTAAGCAGAAATAGGAT
GGGACAAAAGATACATGCTAACTGGAATTCTAGTTAGTACATACTTACCTCTGCATCACCTTGT
TTTTTTGGCTGAGGCAGCTAGCATAGTCTAATTAATTTTTCCCCTTCACCTAACACAACATGCT
AGAACGGCATATTCAAGCAGCTCTAGTCCTCCTTTTGTTTCTAGAGATTTATTTGAAAATACTA
CTAATTTTTGCCAATTGCATCCAAAGATGTTTTTATCCTGTGGTGCATGCCTGTTTAAATCACA
TAAGTGTACAAGATTGTTAGGTTCCTGGCCGCACTTTGCCAACATAGACCAATAAAATGTCCAT
AATTAGCCCTGCATATGCCATTGCTAGCAGAATATCCATAGTGAACATTACCTGAAGGAAGCTC
CCATTTGGTGCCCTGATGCGCACCCTATTCTTATCGGTGTCACTGCGCACGATCTGGAATGTTT
CTGACAGACCAGGCGTAGTCGCTGTTGCGATGACGGTTCCATTGCTGTCAATGCCCATGAATTG
CTTTTTGAACACCCTGAGATTGAACGTTGTCTCATCTATCCTCCACAGTGTGAAGCTCTCCCAT
CAGAAGGCCACTGCTCGGTTGGCAACAATGGTTTGGCCGCCGCCCTGTTCGGCTGCAAGGTACT
TGTCCTGGATCACAGACTTGATATGGAGAGTGGTACCGTCCTATAAAGTTACATGATTTTTGAA
ACACCATGAGATCACTGCCAAAACACAACAGGGAACCATCCAAATGGCTAATGTTCTAACTGAA
GGTACCATGAAATTGAGTATAGACATACCAGGAGGTCATTGTTGGGTATACCGTCAAATAGTGA
CGGTAGAATCCAGCCCTCTGTCACAAGCCAGCCGCCAAGGTTCACCGACCGGATGGGTGGTGAT
GATGGAGGCAGATTATTGAGGGAGATGTACCCATTCTTGATCATCCACTCCATGCTCCAGTGGT
TCTTGACGTTCTTGAATGTCCAATAGGACCATCCAAAAGTAGCTTTCCCATACAGGTCTAGCTG
CGCTTGCGCAAAATTTTGGTAGTCTTCCTTGGATGCATTATCCACGTACCACTCGGCCACCCAT
TCTCCTGTTGCAAAGAAGAGCGCATACCAAACAATGTATCAGTTGAGCACTCCAGCATTTTCAA
ATTTTCAATAGATCTGACCAAATATAAATTTTTTTTTGTCAATTTTGCTTATTGTATTAATCAA
ATGAGATCAATTTTGCACTTCTCCCATATGAGTGTAATGTGAAACCGAAGAGGAAGAAACAAGA
GAAAAATGTCAGTGCCACATATTTTCTTTGAAAGGGATCAGTGCCACATATTACTCCCTCCGTT
TCGAAATGTTTGACGCCGTTGACTTTTTAGCACATGCTTGCACCGTTTGTCTTATTCAAAAAAT
TTAAGTAATTATTAATTCTTTTTCTATCATTTGATTCATTGTNTAAATATATTTTTATGTAGGC
ATATAATTTTACATATTTCACAAAAGTTTTGAATAAGACGAACGGTCAAACATGTGCTAAAAAG
TCAACGGTGTCAAACATTTCGAAACGGAGGGAGTAGTACCTACCGACAAATGTTAGAGGAACGT
TCTGCTTTGTGACCGTGTTGATATCTGATGAACGGTTATTCCTTACAAAATTGATGTTCTGCTC
CACAGTGTAGATATCAAACATGCTGTTATACAGGTTATAGTAATGCACATCGATAACCGCACCA
AAGAGACTGCTGGCTACTGAGAGAAACTCCGTTGGATCCCCTGACATTCGAGTTGACAGGATTA
CATAGGCTTGCAAAGTGTATTTTCTTACAGCATTGTATGCGTCTTGATAGTATTTTGCTAATGT
ATCCACAGGTACATCTGGTGCCAGTGGTTCGTTGAGTAATTCTATTGCTAGGAGGCTTGAACTT
CTGGCATATCTGCATTCAGAGGAAAAAAATAAGTTAAGAACATTTCAGAAGTTCTGTTAGATGG
ATTGAGCATAATCTGAGTACAGTTGATTTGCCAATTTTTTATTATTGACCTGGATGCAAGGAAA
TCTATGACATCCACAGTTTGTGCGATGTTTGCAGCAGAGGTGCCCCACTCCAATGAGCCATCCC
TGGAGGCACTGTGATCCAACCGATTCTGAGACCCTGGTGCTGCATGCAAGTCCACAATGATACC
TATGTTGTACTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021