Detail information of BGIOSGA035249_circ_g.1


General Information
CircRNA Name BGIOSGA035249_circ_g.1
ID in PlantcircBase osi_circ_009005
Alias Chr11:18089349_18090183(MH63RS2), Chr11:18221331_18222153(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 12779285-12780119  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, find_circ
Parent gene BGIOSGA035249
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035249-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATAT
TGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGggcatatctctaaagacccaggagctat
atgcacttgtgtttgctgctcgttacttggacctgttcattcattttatatctctgtataacgc
tgtcatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCATATCTCTAAAGACCCAGGAGCTATATGCACTTGTGTTTGCTGCTCGTTACTTGGACCTGT
TCATTCATTTTATATCTCTGTATAACGCTGTCATGAAGTTGGTCTTTCTGGCAAGTTCTTTCTC
AATAGTTTGGTACATGAGGCGGCATAAGATTGTCCGAAGAACCTATGACAAGGATCATGACACC
TTTCGTCATCACTTCTTAGTGTTGCCATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTA
CTTTTAGAGAGGTCAGTTTGATTTCTTCTGCATTACCGCATAGTGGTGTTTACAACTGTGATGC
TGTTGATATGTAAAGCAATTCAATGGACCATTTACCTTTGTAGGCTCCCATCGGATGGCCTAAA
TAGCCAAAGAAAAAGCCAAATTTTAAATTTTCAAACTTTATTTTGAGATATTTTCAACGTAGTT
TCTTTTTCAGCATTAGCTTTTAAGTCACCAAGAATACATATATAAAAGTTTTACCAACAAATTC
ATTTTTATTCCTTAATAAGCCGTTTTGGCTTATTAGGGGAAAAGCCAAACAATGGGGCCGGTAG
ATTATGTACTACCATTTTTGAATTTTGGACATCAAATCCATCATTTATGGATGTGATGGAAGTC
TGTTTGCCTCTTTTATTGTTGAAACTTAGTACATTATAGACTCTGCAATTTTGACCATTCACAC
CATTATTTGGGGCAGGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTC
AACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCT
AGG
Conservation Information
Conserved circRNAs osa_circ_009332
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021