Detail information of Os06g0708900_circ_g.2


General Information
CircRNA Name Os06g0708900_circ_g.2
ID in PlantcircBase osa_circ_032290
Alias Os06circ17972
Organism Oryza sativa
Position chr6: 29993332-29993483  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0708900
Parent gene annotation Similar to zinc knuckle (CCHC-type) family protein. (Os06t070890
0-01)
Parent gene strand -
Alternative splicing Os06g0708900_circ_g.3
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os06t0708900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCTGCTTTTGCACTCTCTGCGTTGTAGCCAGGTGGGCGGACATACATGAAACTCACAGCTTT
CATTATCTCCATattgaagaggtgcttgcagcagcagcactttgggttgcatcaccttcaccag
acctcctcttctcatcttcaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGAAGAGGTGCTTGCAGCAGCAGCACTTTGGGTTGCATCACCTTCACCAGACCTCCTCTTCT
CATCTTCAATTTCAGCTGCTTTTGCACTCTCTGCGTTGTAGCCAGGTGGGCGGACATACATGAA
ACTCACAGCTTTCATTATCTCCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.308189145
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015