Detail information of BGIOSGA016975_circ_g.1


General Information
CircRNA Name BGIOSGA016975_circ_g.1
ID in PlantcircBase osi_circ_014698
Alias Chr04:29790624_29791067(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27951893-27952336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016975
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016975-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCCGTCGGCCCCATCGCGAAT
GTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGggttgggatggagttctgggcgcagtgg
gcgcaccgctcgctgtggcacgcctccctgtggcacatgcacgagtcgcaccaccgtgcgcgcg
agggcccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGCTCGCTGTGGCACGCCTCCCTGTGGCAC
ATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGTTCGAGCTCAACGACGTGTTCGCCATCA
CCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGGGGCATCGTCCCCGG
CCTCTGCTTCGGCGCGGTAAGCCCAGCGCCCTGCAGGGAGCACGTAACGCTCTCTCTGGTCGGC
CGGGCCCACCTGTCAGAGCCATCCAATTGGGATCTGACCTGCCACGTGTCCGTTTCTTACAGGG
CCTCGGGATTACGCTGTTCGGCATGGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGC
TTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021