Detail information of AT2G02090_circ_g.2


General Information
CircRNA Name AT2G02090_circ_g.2
ID in PlantcircBase ath_circ_012537
Alias 2:524905-525085
Organism Arabidpsis thaliana
Position chr2: 524905-525085  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02090
Parent gene annotation ETL1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02090.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTATAGGTGGAAAAACTTGATGTCTGTGGCCAGAAACGCAAACCAGCGTCTTATGCTTACAG
GAACGCCTCTACAAAATGATTTGCATtgaacaacagaaagatgaccgaaaagtactgaaacggt
ggcgctggagctgtgttttgatggatgaagcccatgcgttaaaggataagaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 181
Transcript exons: 524905-525085
TGAACAACAGAAAGATGACCGAAAAGTACTGAAACGGTGGCGCTGGAGCTGTGTTTTGATGGAT
GAAGCCCATGCGTTAAAGGATAAGAATAGTTATAGGTGGAAAAACTTGATGTCTGTGGCCAGAA
ACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAATGATTTGCAT

Genomic sequence TGAACAACAGAAAGATGACCGAAAAGTACTGAAACGGTGGCGCTGGAGCTGTGTTTTGATGGAT
GAAGCCCATGCGTTAAAGGATAAGAATAGTTATAGGTGGAAAAACTTGATGTCTGTGGCCAGAA
ACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAATGATTTGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.423683777
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020