Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G16710_circ_g.3 |
ID in PlantcircBase | ath_circ_002941 |
Alias | At_ciR3662 |
Organism | Arabidpsis thaliana |
Position | chr1: 5720163-5720539 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G16710 |
Parent gene annotation |
Histone acetyltransferase HAC12 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G16710.6:2 AT1G16710.2:2 AT1G16710.8:2 AT1G16710.1:2 AT1G16710.5:2 AT1G16710.9:2 AT1G16710.3:2 AT1G16710.7:2 AT1G16710.4:2 AT1G16710.10:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.454965111 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5720184-5720536(+) |
Potential amino acid sequence |
MKEDFIMVHLQHSCTHCCTLMVTGNRWVCSQCKDFQLCDGCYEAEQKREDRERHPVNQKDKHNI FPLGETIHPMKEDFIMVHLQHSCTHCCTLMVTGNRWVCSQCKDFQLCDGCYEAEQKREDRERHP VNQKDKHNIFPLGETIHPMKEDFIMVHLQHSCTHCCTLMVTGNRWVCSQCKDFQLCDGCYEAEQ KREDRERHPVNQKDKHNIFPLGETIHPMKEDFIMVHLQHSCTHCCTLMVTGNRWVCSQCKDFQL CDGCYEAEQKREDRERHPVNQKDKHNIFP(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |