Detail information of AT2G33820_circ_g.4


General Information
CircRNA Name AT2G33820_circ_g.4
ID in PlantcircBase ath_circ_016339
Alias 2:14306963-14307255
Organism Arabidpsis thaliana
Position chr2: 14306963-14307255  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G33820
Parent gene annotation Mitochondrial substrate carrier family protein
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues root;leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33820.4:2
AT2G33820.2:2
AT2G33820.1:2
AT2G33820.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGCTCTGTTGGACATAACACAAAACTAATGATAGCTCCACCAAACATAGCAGACGGAACAAT
TATCTCTGGTCGTGGCCCATCATCTGGCAAAGTTCCcccatcatttttaacggtctgaacggca
caatcaagaggactgttgtatctacggaagttaggaaccagagaatccgttccttggatctgca
ttctacac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 204
Transcript exons: 14306963-14307061,14307151-14307255
CCCATCATTTTTAACGGTCTGAACGGCACAATCAAGAGGACTGTTGTATCTACGGAAGTTAGGA
ACCAGAGAATCCGTTCCTTGGATCTGCATTCTACACTTTACTAGCTCTGTTGGACATAACACAA
AACTAATGATAGCTCCACCAAACATAGCAGACGGAACAATTATCTCTGGTCGTGGCCCATCATC
TGGCAAAGTTCC

Genomic sequence CCCATCATTTTTAACGGTCTGAACGGCACAATCAAGAGGACTGTTGTATCTACGGAAGTTAGGA
ACCAGAGAATCCGTTCCTTGGATCTGCATTCTACACTGAACAAAACAGTGAATGTCCCAAAACT
CCATGGAAACCATCAAAGGTGATAATTGCGGGGAAAGAAATGGTGTTCTGGAGATTTCACCTTT
ACTAGCTCTGTTGGACATAACACAAAACTAATGATAGCTCCACCAAACATAGCAGACGGAACAA
TTATCTCTGGTCGTGGCCCATCATCTGGCAAAGTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.284325322
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020