Detail information of AT1G17470_circ_g.5


General Information
CircRNA Name AT1G17470_circ_g.5
ID in PlantcircBase ath_circ_003089
Alias NA
Organism Arabidpsis thaliana
Position chr1: 6004510-6004616  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT1G17470
Parent gene annotation Developmentally-regulated G-protein 1
Parent gene strand +
Alternative splicing AT1G17470_circ_g.1 AT1G17470_circ_g.2 AT1G17470_circ_g.3 AT1G17470_circ_g.4 AT1G17470_circ_g.6 AT1G17470_circ_g.7 AT1G17470_circ_g.8 AT1G17470_circ_g.9
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAAGTTCGCCTATCAGAAAAAGATAATCAAGAGGATATGAACTTTCGTTATgttgaaatcca
attgctttcttttcttgttggttatctgatttctttttggatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAAATCCAATTGCTTTCTTTTCTTGTTGGTTATCTGATTTCTTTTTGGATGCCCAAGTTCG
CCTATCAGAAAAAGATAATCAAGAGGATATGAACTTTCGTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.157321106
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017